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Cluster: HRGMv2_2284_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2284_17 HRGMv2_2284_17_20 23122 25059 - GH13_4
TC HRGMv2_2284_17 HRGMv2_2284_17_21 25129 26226 - 3.A.1.1.22
pfam HRGMv2_2284_17 HRGMv2_2284_17_22 26258 27787 - GalP_UDP_transf | GalP_UDP_tr_C
pfam HRGMv2_2284_17 HRGMv2_2284_17_23 27822 28991 - GHMP_kinases_N | GHMP_kinases_C | GalKase_gal_bdg
CAZyme HRGMv2_2284_17 HRGMv2_2284_17_24 28994 30631 - GH13_31
CAZyme HRGMv2_2284_17 HRGMv2_2284_17_25 30638 32821 - GH36
TC HRGMv2_2284_17 HRGMv2_2284_17_26 32838 33674 - 3.A.1.1.28
TC HRGMv2_2284_17 HRGMv2_2284_17_27 33674 34549 - 3.A.1.1.28
STP HRGMv2_2284_17 HRGMv2_2284_17_28 34569 35852 - SBP_bac_1
TF HRGMv2_2284_17 HRGMv2_2284_17_29 36066 36917 + HTH_AraC | HTH_AraC
TC HRGMv2_2284_17 HRGMv2_2284_17_30 36999 37724 - 3.A.1.3.25
TC HRGMv2_2284_17 HRGMv2_2284_17_31 37711 38424 - 3.A.1.3.15
TC HRGMv2_2284_17 HRGMv2_2284_17_32 38441 39256 - 3.A.1.3.15
pfam HRGMv2_2284_17 HRGMv2_2284_17_33 39355 40002 - UPF0029 | DUF1949
CAZyme HRGMv2_2284_17 HRGMv2_2284_17_34 40147 42744 + GT51
pfam HRGMv2_2284_17 HRGMv2_2284_17_35 42895 43251 - SpoVAC_SpoVAEB
STP HRGMv2_2284_17 HRGMv2_2284_17_36 43340 44521 - Aminotran_1_2
TC HRGMv2_2284_17 HRGMv2_2284_17_37 44571 45611 - 9.A.11.1.1
TC HRGMv2_2284_17 HRGMv2_2284_17_38 45622 46068 - 9.A.11.1.1
pfam HRGMv2_2284_17 HRGMv2_2284_17_39 46082 46489 - SpoVAB
TC HRGMv2_2284_17 HRGMv2_2284_17_40 46493 47128 - 9.A.11.1.1
Gene ID: HRGMv2_2284_17_20
Type: CAZyme
Location: 23122 - 25059 (-)
Gene ID: HRGMv2_2284_17_21
Type: TC
Location: 25129 - 26226 (-)
Gene ID: HRGMv2_2284_17_22
Type: pfam
Location: 26258 - 27787 (-)
Gene ID: HRGMv2_2284_17_23
Type: pfam
Location: 27822 - 28991 (-)
Gene ID: HRGMv2_2284_17_24
Type: CAZyme
Location: 28994 - 30631 (-)
Gene ID: HRGMv2_2284_17_25
Type: CAZyme
Location: 30638 - 32821 (-)
Gene ID: HRGMv2_2284_17_26
Type: TC
Location: 32838 - 33674 (-)
Gene ID: HRGMv2_2284_17_27
Type: TC
Location: 33674 - 34549 (-)
Gene ID: HRGMv2_2284_17_28
Type: STP
Location: 34569 - 35852 (-)
Gene ID: HRGMv2_2284_17_29
Type: TF
Location: 36066 - 36917 (+)
Gene ID: HRGMv2_2284_17_30
Type: TC
Location: 36999 - 37724 (-)
Gene ID: HRGMv2_2284_17_31
Type: TC
Location: 37711 - 38424 (-)
Gene ID: HRGMv2_2284_17_32
Type: TC
Location: 38441 - 39256 (-)
Gene ID: HRGMv2_2284_17_33
Type: pfam
Location: 39355 - 40002 (-)
Gene ID: HRGMv2_2284_17_34
Type: CAZyme
Location: 40147 - 42744 (+)
Gene ID: HRGMv2_2284_17_35
Type: pfam
Location: 42895 - 43251 (-)
Gene ID: HRGMv2_2284_17_36
Type: STP
Location: 43340 - 44521 (-)
Gene ID: HRGMv2_2284_17_37
Type: TC
Location: 44571 - 45611 (-)
Gene ID: HRGMv2_2284_17_38
Type: TC
Location: 45622 - 46068 (-)
Gene ID: HRGMv2_2284_17_39
Type: pfam
Location: 46082 - 46489 (-)
Gene ID: HRGMv2_2284_17_40
Type: TC
Location: 46493 - 47128 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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