Cluster: HRGMv2_2284_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2284
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2284_12 | HRGMv2_2284_12_24 | 22070 | 22927 | + | 3.A.1.149.1 |
| pfam | HRGMv2_2284_12 | HRGMv2_2284_12_25 | 22929 | 23567 | + | ABC2_membrane_5 |
| TC | HRGMv2_2284_12 | HRGMv2_2284_12_26 | 23641 | 25284 | - | 3.A.1.121.4 |
| STP | HRGMv2_2284_12 | HRGMv2_2284_12_27 | 25379 | 26212 | - | Fer4 |
| TC | HRGMv2_2284_12 | HRGMv2_2284_12_28 | 26508 | 27890 | + | 2.A.40.7.6 |
| TC | HRGMv2_2284_12 | HRGMv2_2284_12_29 | 27912 | 29729 | + | 3.A.1.120.6 |
| CAZyme | HRGMv2_2284_12 | HRGMv2_2284_12_30 | 29792 | 31624 | + | GH13_11 |
Gene ID: HRGMv2_2284_12_24
Type: TC
Location: 22070 - 22927 (+)
Type: TC
Location: 22070 - 22927 (+)
Gene ID: HRGMv2_2284_12_25
Type: pfam
Location: 22929 - 23567 (+)
Type: pfam
Location: 22929 - 23567 (+)
Gene ID: HRGMv2_2284_12_26
Type: TC
Location: 23641 - 25284 (-)
Type: TC
Location: 23641 - 25284 (-)
Gene ID: HRGMv2_2284_12_27
Type: STP
Location: 25379 - 26212 (-)
Type: STP
Location: 25379 - 26212 (-)
Gene ID: HRGMv2_2284_12_28
Type: TC
Location: 26508 - 27890 (+)
Type: TC
Location: 26508 - 27890 (+)
Gene ID: HRGMv2_2284_12_29
Type: TC
Location: 27912 - 29729 (+)
Type: TC
Location: 27912 - 29729 (+)
Gene ID: HRGMv2_2284_12_30
Type: CAZyme
Location: 29792 - 31624 (+)
Type: CAZyme
Location: 29792 - 31624 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Frisingicoccus
Species
Frisingicoccus caecimuris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.