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Cluster: HRGMv2_2277_CGC57

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2277_28 HRGMv2_2277_28_16 17024 18442 - 3.A.1.1.11
TC HRGMv2_2277_28 HRGMv2_2277_28_17 18477 19325 - 3.A.1.1.11
TC HRGMv2_2277_28 HRGMv2_2277_28_18 19330 20226 - 3.A.1.1.11
CAZyme HRGMv2_2277_28 HRGMv2_2277_28_19 20244 21644 - GH4
TF HRGMv2_2277_28 HRGMv2_2277_28_20 22043 22702 + GntR
STP HRGMv2_2277_28 HRGMv2_2277_28_21 22802 23029 - PTS-HPr
TC HRGMv2_2277_28 HRGMv2_2277_28_22 23240 24229 - 3.A.1.2.9
TF HRGMv2_2277_28 HRGMv2_2277_28_23 24430 25986 + HTH_AraC | HTH_AraC
TC HRGMv2_2277_28 HRGMv2_2277_28_24 25983 27860 + 8.A.59.2.1
NULL(UNKNOWN) HRGMv2_2277_28 HRGMv2_2277_28_25 27894 29114 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_2277_28 HRGMv2_2277_28_26 29192 30352 - OEP
TC HRGMv2_2277_28 HRGMv2_2277_28_27 30371 33376 - 2.A.6.3.6
Gene ID: HRGMv2_2277_28_16
Type: TC
Location: 17024 - 18442 (-)
Gene ID: HRGMv2_2277_28_17
Type: TC
Location: 18477 - 19325 (-)
Gene ID: HRGMv2_2277_28_18
Type: TC
Location: 19330 - 20226 (-)
Gene ID: HRGMv2_2277_28_19
Type: CAZyme
Location: 20244 - 21644 (-)
Gene ID: HRGMv2_2277_28_20
Type: TF
Location: 22043 - 22702 (+)
Gene ID: HRGMv2_2277_28_21
Type: STP
Location: 22802 - 23029 (-)
Gene ID: HRGMv2_2277_28_22
Type: TC
Location: 23240 - 24229 (-)
Gene ID: HRGMv2_2277_28_23
Type: TF
Location: 24430 - 25986 (+)
Gene ID: HRGMv2_2277_28_24
Type: TC
Location: 25983 - 27860 (+)
Gene ID: HRGMv2_2277_28_25
Type:
Location: 27894 - 29114 (-)
Gene ID: HRGMv2_2277_28_26
Type: pfam
Location: 29192 - 30352 (-)
Gene ID: HRGMv2_2277_28_27
Type: TC
Location: 30371 - 33376 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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