Cluster: HRGMv2_2268_CGC19
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2268
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2268_98 | HRGMv2_2268_98_7 | 11991 | 12842 | + | 3.A.1.126.1 |
| pfam | HRGMv2_2268_98 | HRGMv2_2268_98_8 | 12842 | 13489 | + | ABC2_membrane_5 |
| TF | HRGMv2_2268_98 | HRGMv2_2268_98_9 | 13506 | 14432 | - | HTH_5 |
| CAZyme | HRGMv2_2268_98 | HRGMv2_2268_98_10 | 14623 | 16353 | + | GH2 |
| STP | HRGMv2_2268_98 | HRGMv2_2268_98_11 | 16369 | 16815 | + | NUDIX |
| STP | HRGMv2_2268_98 | HRGMv2_2268_98_12 | 16881 | 17510 | + | Pribosyltran |
| TC | HRGMv2_2268_98 | HRGMv2_2268_98_13 | 17578 | 18942 | - | 2.A.40.7.4 |
| NULL(UNKNOWN) | HRGMv2_2268_98 | HRGMv2_2268_98_14 | 19138 | 19248 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_2268_98 | HRGMv2_2268_98_15 | 19282 | 20337 | + | FIST |
| TC | HRGMv2_2268_98 | HRGMv2_2268_98_16 | 20351 | 21295 | + | 1.B.52.2.1 |
| NULL(UNKNOWN) | HRGMv2_2268_98 | HRGMv2_2268_98_17 | 21548 | 22108 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2268_98 | HRGMv2_2268_98_18 | 22175 | 25603 | + | 9.B.34.1.1 |
Gene ID: HRGMv2_2268_98_7
Type: TC
Location: 11991 - 12842 (+)
Type: TC
Location: 11991 - 12842 (+)
Gene ID: HRGMv2_2268_98_8
Type: pfam
Location: 12842 - 13489 (+)
Type: pfam
Location: 12842 - 13489 (+)
Gene ID: HRGMv2_2268_98_9
Type: TF
Location: 13506 - 14432 (-)
Type: TF
Location: 13506 - 14432 (-)
Gene ID: HRGMv2_2268_98_10
Type: CAZyme
Location: 14623 - 16353 (+)
Type: CAZyme
Location: 14623 - 16353 (+)
Gene ID: HRGMv2_2268_98_11
Type: STP
Location: 16369 - 16815 (+)
Type: STP
Location: 16369 - 16815 (+)
Gene ID: HRGMv2_2268_98_12
Type: STP
Location: 16881 - 17510 (+)
Type: STP
Location: 16881 - 17510 (+)
Gene ID: HRGMv2_2268_98_13
Type: TC
Location: 17578 - 18942 (-)
Type: TC
Location: 17578 - 18942 (-)
Gene ID: HRGMv2_2268_98_14
Type:
Location: 19138 - 19248 (+)
Type:
Location: 19138 - 19248 (+)
Gene ID: HRGMv2_2268_98_15
Type: STP
Location: 19282 - 20337 (+)
Type: STP
Location: 19282 - 20337 (+)
Gene ID: HRGMv2_2268_98_16
Type: TC
Location: 20351 - 21295 (+)
Type: TC
Location: 20351 - 21295 (+)
Gene ID: HRGMv2_2268_98_17
Type:
Location: 21548 - 22108 (+)
Type:
Location: 21548 - 22108 (+)
Gene ID: HRGMv2_2268_98_18
Type: TC
Location: 22175 - 25603 (+)
Type: TC
Location: 22175 - 25603 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
CAG-303
Species
CAG-303 sp000437755
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.