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Cluster: HRGMv2_2236_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2236_2 HRGMv2_2236_2_36 40887 43739 + GH25
pfam HRGMv2_2236_2 HRGMv2_2236_2_37 43810 44892 + 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd
pfam HRGMv2_2236_2 HRGMv2_2236_2_38 44925 45794 + NTP_transferase | NTP_transf_3
CAZyme HRGMv2_2236_2 HRGMv2_2236_2_39 45784 47136 + GH25
pfam HRGMv2_2236_2 HRGMv2_2236_2_40 47191 47754 + dTDP_sugar_isom
TC HRGMv2_2236_2 HRGMv2_2236_2_41 47775 48806 + 3.A.1.104.1
TC HRGMv2_2236_2 HRGMv2_2236_2_42 48893 50212 + 3.A.1.103.6
pfam HRGMv2_2236_2 HRGMv2_2236_2_43 50245 52353 + PCMT | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31
CAZyme HRGMv2_2236_2 HRGMv2_2236_2_44 52357 54603 + GT2
CAZyme HRGMv2_2236_2 HRGMv2_2236_2_45 54656 56659 + GT2 | GT2
pfam HRGMv2_2236_2 HRGMv2_2236_2_46 56735 58456 + PGM_PMM_I | PGM_PMM_II | PGM_PMM_III
CAZyme HRGMv2_2236_2 HRGMv2_2236_2_47 58602 60035 + GT2
CAZyme HRGMv2_2236_2 HRGMv2_2236_2_48 59993 61000 + GT2
TC HRGMv2_2236_2 HRGMv2_2236_2_49 61153 62562 + 9.B.18.1.1
pfam HRGMv2_2236_2 HRGMv2_2236_2_50 62754 64022 + LytR_cpsA_psr
CAZyme HRGMv2_2236_2 HRGMv2_2236_2_51 64092 65090 + GT2
Gene ID: HRGMv2_2236_2_36
Type: CAZyme
Location: 40887 - 43739 (+)
Gene ID: HRGMv2_2236_2_37
Type: pfam
Location: 43810 - 44892 (+)
Gene ID: HRGMv2_2236_2_38
Type: pfam
Location: 44925 - 45794 (+)
Gene ID: HRGMv2_2236_2_39
Type: CAZyme
Location: 45784 - 47136 (+)
Gene ID: HRGMv2_2236_2_40
Type: pfam
Location: 47191 - 47754 (+)
Gene ID: HRGMv2_2236_2_41
Type: TC
Location: 47775 - 48806 (+)
Gene ID: HRGMv2_2236_2_42
Type: TC
Location: 48893 - 50212 (+)
Gene ID: HRGMv2_2236_2_43
Type: pfam
Location: 50245 - 52353 (+)
Gene ID: HRGMv2_2236_2_44
Type: CAZyme
Location: 52357 - 54603 (+)
Gene ID: HRGMv2_2236_2_45
Type: CAZyme
Location: 54656 - 56659 (+)
Gene ID: HRGMv2_2236_2_46
Type: pfam
Location: 56735 - 58456 (+)
Gene ID: HRGMv2_2236_2_47
Type: CAZyme
Location: 58602 - 60035 (+)
Gene ID: HRGMv2_2236_2_48
Type: CAZyme
Location: 59993 - 61000 (+)
Gene ID: HRGMv2_2236_2_49
Type: TC
Location: 61153 - 62562 (+)
Gene ID: HRGMv2_2236_2_50
Type: pfam
Location: 62754 - 64022 (+)
Gene ID: HRGMv2_2236_2_51
Type: CAZyme
Location: 64092 - 65090 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2236_2_38 vegetarian > omnivore 1.14010 0.01810

🧭 Explore Read Mapping of CGC

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