Cluster: HRGMv2_2236_CGC49
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2236
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2236_50 | HRGMv2_2236_50_3 | 813 | 1871 | - | GH5_37 |
| TF | HRGMv2_2236_50 | HRGMv2_2236_50_4 | 2173 | 2916 | + | HTH_AraC | HTH_AraC |
| TC | HRGMv2_2236_50 | HRGMv2_2236_50_5 | 3021 | 4193 | + | 1.A.1.24.5 |
| pfam | HRGMv2_2236_50 | HRGMv2_2236_50_6 | 4314 | 5801 | - | Radical_SAM | SPASM |
| pfam | HRGMv2_2236_50 | HRGMv2_2236_50_7 | 5836 | 6384 | - | DUF308 | DUF308 | DUF308 |
| TC | HRGMv2_2236_50 | HRGMv2_2236_50_8 | 6547 | 7689 | - | 9.B.34.1.3 |
Gene ID: HRGMv2_2236_50_3
Type: CAZyme
Location: 813 - 1871 (-)
Type: CAZyme
Location: 813 - 1871 (-)
Gene ID: HRGMv2_2236_50_4
Type: TF
Location: 2173 - 2916 (+)
Type: TF
Location: 2173 - 2916 (+)
Gene ID: HRGMv2_2236_50_5
Type: TC
Location: 3021 - 4193 (+)
Type: TC
Location: 3021 - 4193 (+)
Gene ID: HRGMv2_2236_50_6
Type: pfam
Location: 4314 - 5801 (-)
Type: pfam
Location: 4314 - 5801 (-)
Gene ID: HRGMv2_2236_50_7
Type: pfam
Location: 5836 - 6384 (-)
Type: pfam
Location: 5836 - 6384 (-)
Gene ID: HRGMv2_2236_50_8
Type: TC
Location: 6547 - 7689 (-)
Type: TC
Location: 6547 - 7689 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
UBA3282
Species
UBA3282 sp934418125
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.