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Cluster: HRGMv2_2236_CGC44

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2236_30 HRGMv2_2236_30_11 11089 12297 + GH53
TF HRGMv2_2236_30 HRGMv2_2236_30_12 12363 13358 - LacI
CAZyme HRGMv2_2236_30 HRGMv2_2236_30_13 13636 15126 + GH77
pfam HRGMv2_2236_30 HRGMv2_2236_30_14 15232 16581 + SBP_bac_8
TC HRGMv2_2236_30 HRGMv2_2236_30_15 16837 18264 + 3.A.1.1.27
TC HRGMv2_2236_30 HRGMv2_2236_30_16 18264 19106 + 3.A.1.1.27
CAZyme HRGMv2_2236_30 HRGMv2_2236_30_17 19234 20982 + GH13_36
TC HRGMv2_2236_30 HRGMv2_2236_30_18 21415 22260 + 1.A.16.1.3
Gene ID: HRGMv2_2236_30_11
Type: CAZyme
Location: 11089 - 12297 (+)
Gene ID: HRGMv2_2236_30_12
Type: TF
Location: 12363 - 13358 (-)
Gene ID: HRGMv2_2236_30_13
Type: CAZyme
Location: 13636 - 15126 (+)
Gene ID: HRGMv2_2236_30_14
Type: pfam
Location: 15232 - 16581 (+)
Gene ID: HRGMv2_2236_30_15
Type: TC
Location: 16837 - 18264 (+)
Gene ID: HRGMv2_2236_30_16
Type: TC
Location: 18264 - 19106 (+)
Gene ID: HRGMv2_2236_30_17
Type: CAZyme
Location: 19234 - 20982 (+)
Gene ID: HRGMv2_2236_30_18
Type: TC
Location: 21415 - 22260 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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