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Cluster: HRGMv2_2236_CGC43

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2236_29 HRGMv2_2236_29_8 9506 11815 - GT35
TF HRGMv2_2236_29 HRGMv2_2236_29_9 11845 12834 - LacI
pfam HRGMv2_2236_29 HRGMv2_2236_29_10 13088 13975 + DegV
TC HRGMv2_2236_29 HRGMv2_2236_29_11 14042 14983 - 2.A.19.5.2
TC HRGMv2_2236_29 HRGMv2_2236_29_12 15357 16427 - 3.A.1.2.3
STP HRGMv2_2236_29 HRGMv2_2236_29_13 16440 17411 - Peripla_BP_1
TC HRGMv2_2236_29 HRGMv2_2236_29_14 17408 19216 - 9.B.33.1.1
TF HRGMv2_2236_29 HRGMv2_2236_29_15 19206 20843 - HTH_AraC | HTH_AraC
TC HRGMv2_2236_29 HRGMv2_2236_29_16 20854 21999 - 3.A.1.2.5
TC HRGMv2_2236_29 HRGMv2_2236_29_17 22134 23831 - 1.B.52.2.2
TC HRGMv2_2236_29 HRGMv2_2236_29_18 23863 25032 - 3.A.1.2.5
TC HRGMv2_2236_29 HRGMv2_2236_29_19 25025 26584 - 3.A.1.2.5
TC HRGMv2_2236_29 HRGMv2_2236_29_20 26714 27865 - 3.A.1.2.5
CAZyme HRGMv2_2236_29 HRGMv2_2236_29_21 28051 30897 - GH2
NULL(UNKNOWN) HRGMv2_2236_29 HRGMv2_2236_29_22 30878 31240 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2236_29 HRGMv2_2236_29_23 31273 32646 - 2.A.66.1.32
Gene ID: HRGMv2_2236_29_8
Type: CAZyme
Location: 9506 - 11815 (-)
Gene ID: HRGMv2_2236_29_9
Type: TF
Location: 11845 - 12834 (-)
Gene ID: HRGMv2_2236_29_10
Type: pfam
Location: 13088 - 13975 (+)
Gene ID: HRGMv2_2236_29_11
Type: TC
Location: 14042 - 14983 (-)
Gene ID: HRGMv2_2236_29_12
Type: TC
Location: 15357 - 16427 (-)
Gene ID: HRGMv2_2236_29_13
Type: STP
Location: 16440 - 17411 (-)
Gene ID: HRGMv2_2236_29_14
Type: TC
Location: 17408 - 19216 (-)
Gene ID: HRGMv2_2236_29_15
Type: TF
Location: 19206 - 20843 (-)
Gene ID: HRGMv2_2236_29_16
Type: TC
Location: 20854 - 21999 (-)
Gene ID: HRGMv2_2236_29_17
Type: TC
Location: 22134 - 23831 (-)
Gene ID: HRGMv2_2236_29_18
Type: TC
Location: 23863 - 25032 (-)
Gene ID: HRGMv2_2236_29_19
Type: TC
Location: 25025 - 26584 (-)
Gene ID: HRGMv2_2236_29_20
Type: TC
Location: 26714 - 27865 (-)
Gene ID: HRGMv2_2236_29_21
Type: CAZyme
Location: 28051 - 30897 (-)
Gene ID: HRGMv2_2236_29_22
Type:
Location: 30878 - 31240 (-)
Gene ID: HRGMv2_2236_29_23
Type: TC
Location: 31273 - 32646 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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