Cluster: HRGMv2_2236_CGC39
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate: host glycan
- Genome ID: HRGMv2_2236
- CGC Family ID: CGCFAM_00312
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2236_24 | HRGMv2_2236_24_42 | 43691 | 44983 | - | GH136 |
| NULL(UNKNOWN) | HRGMv2_2236_24 | HRGMv2_2236_24_43 | 44934 | 45395 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2236_24 | HRGMv2_2236_24_44 | 45395 | 46201 | - | 3.A.1.1.4 |
| TC | HRGMv2_2236_24 | HRGMv2_2236_24_45 | 46194 | 47072 | - | 3.A.1.1.4 |
| TC | HRGMv2_2236_24 | HRGMv2_2236_24_46 | 47145 | 47597 | - | 3.A.1.1.4 |
Gene ID: HRGMv2_2236_24_42
Type: CAZyme
Location: 43691 - 44983 (-)
Type: CAZyme
Location: 43691 - 44983 (-)
Gene ID: HRGMv2_2236_24_43
Type:
Location: 44934 - 45395 (-)
Type:
Location: 44934 - 45395 (-)
Gene ID: HRGMv2_2236_24_44
Type: TC
Location: 45395 - 46201 (-)
Type: TC
Location: 45395 - 46201 (-)
Gene ID: HRGMv2_2236_24_45
Type: TC
Location: 46194 - 47072 (-)
Type: TC
Location: 46194 - 47072 (-)
Gene ID: HRGMv2_2236_24_46
Type: TC
Location: 47145 - 47597 (-)
Type: TC
Location: 47145 - 47597 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
UBA3282
Species
UBA3282 sp934418125
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2236_24_45 | vegetarian > vegan | 1.12830 | 0.00289 |
| HRGMv2_2236_24_46 | vegetarian > vegan | 1.35955 | 0.00289 |