Cluster: HRGMv2_2236_CGC33
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: HRGMv2_2236
- CGC Family ID: CGCFAM_00045
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2236_20 | HRGMv2_2236_20_14 | 7502 | 9229 | - | CBM34 | GH13_20 |
| TC | HRGMv2_2236_20 | HRGMv2_2236_20_15 | 9245 | 10090 | - | 3.A.1.1.27 |
| TC | HRGMv2_2236_20 | HRGMv2_2236_20_16 | 10098 | 10988 | - | 3.A.1.1.2 |
| TC | HRGMv2_2236_20 | HRGMv2_2236_20_17 | 11027 | 12286 | - | 3.A.1.1.16 |
| TF | HRGMv2_2236_20 | HRGMv2_2236_20_18 | 12472 | 13503 | + | LacI |
| TC | HRGMv2_2236_20 | HRGMv2_2236_20_19 | 13464 | 14507 | - | 9.A.11.1.1 |
Gene ID: HRGMv2_2236_20_14
Type: CAZyme
Location: 7502 - 9229 (-)
Type: CAZyme
Location: 7502 - 9229 (-)
Gene ID: HRGMv2_2236_20_15
Type: TC
Location: 9245 - 10090 (-)
Type: TC
Location: 9245 - 10090 (-)
Gene ID: HRGMv2_2236_20_16
Type: TC
Location: 10098 - 10988 (-)
Type: TC
Location: 10098 - 10988 (-)
Gene ID: HRGMv2_2236_20_17
Type: TC
Location: 11027 - 12286 (-)
Type: TC
Location: 11027 - 12286 (-)
Gene ID: HRGMv2_2236_20_18
Type: TF
Location: 12472 - 13503 (+)
Type: TF
Location: 12472 - 13503 (+)
Gene ID: HRGMv2_2236_20_19
Type: TC
Location: 13464 - 14507 (-)
Type: TC
Location: 13464 - 14507 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
UBA3282
Species
UBA3282 sp934418125
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2236_20_15 | vegetarian > omnivore | 1.19921 | 0.01810 |
| HRGMv2_2236_20_16 | vegetarian > omnivore | 1.59957 | 0.01810 |
| HRGMv2_2236_20_17 | vegetarian > omnivore | 1.72609 | 0.01810 |
| HRGMv2_2236_20_18 | vegetarian > omnivore | 1.39879 | 0.01810 |