Cluster: HRGMv2_2236_CGC28
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2236
- CGC Family ID: CGCFAM_00390
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2236_16 | HRGMv2_2236_16_26 | 16789 | 17910 | - | GH25 |
| TC | HRGMv2_2236_16 | HRGMv2_2236_16_27 | 17928 | 18824 | - | 2.A.115.1.1 |
| STP | HRGMv2_2236_16 | HRGMv2_2236_16_28 | 18973 | 20196 | - | ACT | PALP |
| TC | HRGMv2_2236_16 | HRGMv2_2236_16_29 | 20233 | 21192 | - | 3.A.5.1.1 |
| pfam | HRGMv2_2236_16 | HRGMv2_2236_16_30 | 21192 | 24752 | - | SMC_N | SMC_hinge | AAA_15 | AAA_23 |
| pfam | HRGMv2_2236_16 | HRGMv2_2236_16_31 | 24766 | 25470 | - | dsrm | Ribonuclease_3 | Ribonucleas_3_3 |
| TC | HRGMv2_2236_16 | HRGMv2_2236_16_32 | 25535 | 25771 | - | 3.D.1.6.3 |
Gene ID: HRGMv2_2236_16_26
Type: CAZyme
Location: 16789 - 17910 (-)
Type: CAZyme
Location: 16789 - 17910 (-)
Gene ID: HRGMv2_2236_16_27
Type: TC
Location: 17928 - 18824 (-)
Type: TC
Location: 17928 - 18824 (-)
Gene ID: HRGMv2_2236_16_28
Type: STP
Location: 18973 - 20196 (-)
Type: STP
Location: 18973 - 20196 (-)
Gene ID: HRGMv2_2236_16_29
Type: TC
Location: 20233 - 21192 (-)
Type: TC
Location: 20233 - 21192 (-)
Gene ID: HRGMv2_2236_16_30
Type: pfam
Location: 21192 - 24752 (-)
Type: pfam
Location: 21192 - 24752 (-)
Gene ID: HRGMv2_2236_16_31
Type: pfam
Location: 24766 - 25470 (-)
Type: pfam
Location: 24766 - 25470 (-)
Gene ID: HRGMv2_2236_16_32
Type: TC
Location: 25535 - 25771 (-)
Type: TC
Location: 25535 - 25771 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
UBA3282
Species
UBA3282 sp934418125
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.