Cluster: HRGMv2_2236_CGC2
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2236
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2236_1 | HRGMv2_2236_1_169 | 189205 | 190896 | - | GH18 |
| pfam | HRGMv2_2236_1 | HRGMv2_2236_1_170 | 191510 | 192268 | + | MecA |
| STP | HRGMv2_2236_1 | HRGMv2_2236_1_171 | 192491 | 194182 | - | EAL | GGDEF |
| TC | HRGMv2_2236_1 | HRGMv2_2236_1_172 | 194229 | 195947 | - | 1.B.52.2.2 |
Gene ID: HRGMv2_2236_1_169
Type: CAZyme
Location: 189205 - 190896 (-)
Type: CAZyme
Location: 189205 - 190896 (-)
Gene ID: HRGMv2_2236_1_170
Type: pfam
Location: 191510 - 192268 (+)
Type: pfam
Location: 191510 - 192268 (+)
Gene ID: HRGMv2_2236_1_171
Type: STP
Location: 192491 - 194182 (-)
Type: STP
Location: 192491 - 194182 (-)
Gene ID: HRGMv2_2236_1_172
Type: TC
Location: 194229 - 195947 (-)
Type: TC
Location: 194229 - 195947 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
UBA3282
Species
UBA3282 sp934418125
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2236_1_172 | vegetarian > vegan | 1.02015 | 0.00289 |