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Cluster: HRGMv2_2236_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2236_1 HRGMv2_2236_1_27 29188 31203 + GH42
CAZyme HRGMv2_2236_1 HRGMv2_2236_1_28 31239 32729 + GH29
TF HRGMv2_2236_1 HRGMv2_2236_1_29 33053 34627 + HTH_AraC
peptidase HRGMv2_2236_1 HRGMv2_2236_1_30 34608 35435 - S09.UPW
TC HRGMv2_2236_1 HRGMv2_2236_1_31 35439 36119 - 9.B.28.1.2
pfam HRGMv2_2236_1 HRGMv2_2236_1_32 36260 38062 - SBP_bac_1
TC HRGMv2_2236_1 HRGMv2_2236_1_33 38135 39100 - 3.A.1.1.29
TC HRGMv2_2236_1 HRGMv2_2236_1_34 39112 40563 - 3.A.1.1.10
TC HRGMv2_2236_1 HRGMv2_2236_1_35 40721 42526 - 8.A.59.2.1
CAZyme HRGMv2_2236_1 HRGMv2_2236_1_36 42513 44588 - GH31_4
CAZyme HRGMv2_2236_1 HRGMv2_2236_1_37 44622 46913 - GH74 | GH74 | GH74
CAZyme HRGMv2_2236_1 HRGMv2_2236_1_38 47006 49345 - GH31_3
Gene ID: HRGMv2_2236_1_27
Type: CAZyme
Location: 29188 - 31203 (+)
Gene ID: HRGMv2_2236_1_28
Type: CAZyme
Location: 31239 - 32729 (+)
Gene ID: HRGMv2_2236_1_29
Type: TF
Location: 33053 - 34627 (+)
Gene ID: HRGMv2_2236_1_30
Type: peptidase
Location: 34608 - 35435 (-)
Gene ID: HRGMv2_2236_1_31
Type: TC
Location: 35439 - 36119 (-)
Gene ID: HRGMv2_2236_1_32
Type: pfam
Location: 36260 - 38062 (-)
Gene ID: HRGMv2_2236_1_33
Type: TC
Location: 38135 - 39100 (-)
Gene ID: HRGMv2_2236_1_34
Type: TC
Location: 39112 - 40563 (-)
Gene ID: HRGMv2_2236_1_35
Type: TC
Location: 40721 - 42526 (-)
Gene ID: HRGMv2_2236_1_36
Type: CAZyme
Location: 42513 - 44588 (-)
Gene ID: HRGMv2_2236_1_37
Type: CAZyme
Location: 44622 - 46913 (-)
Gene ID: HRGMv2_2236_1_38
Type: CAZyme
Location: 47006 - 49345 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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