Cluster: HRGMv2_2235_CGC42
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2235
- CGC Family ID: CGCFAM_03387
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2235_74 | HRGMv2_2235_74_10 | 6029 | 6904 | - | 3.A.1.1.36 |
| TC | HRGMv2_2235_74 | HRGMv2_2235_74_11 | 6923 | 7816 | - | 3.A.1.1.34 |
| TC | HRGMv2_2235_74 | HRGMv2_2235_74_12 | 7832 | 8938 | - | 3.A.1.1.38 |
| pfam | HRGMv2_2235_74 | HRGMv2_2235_74_13 | 9018 | 9764 | - | FRG |
| CAZyme | HRGMv2_2235_74 | HRGMv2_2235_74_14 | 9959 | 10495 | + | GH13_44 |
Gene ID: HRGMv2_2235_74_10
Type: TC
Location: 6029 - 6904 (-)
Type: TC
Location: 6029 - 6904 (-)
Gene ID: HRGMv2_2235_74_11
Type: TC
Location: 6923 - 7816 (-)
Type: TC
Location: 6923 - 7816 (-)
Gene ID: HRGMv2_2235_74_12
Type: TC
Location: 7832 - 8938 (-)
Type: TC
Location: 7832 - 8938 (-)
Gene ID: HRGMv2_2235_74_13
Type: pfam
Location: 9018 - 9764 (-)
Type: pfam
Location: 9018 - 9764 (-)
Gene ID: HRGMv2_2235_74_14
Type: CAZyme
Location: 9959 - 10495 (+)
Type: CAZyme
Location: 9959 - 10495 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Species
Acetatifactor sp900766575
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.