Cluster: HRGMv2_2235_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2235
- CGC Family ID: CGCFAM_00011
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2235_1 | HRGMv2_2235_1_182 | 197857 | 198930 | + | GT4 |
| CAZyme | HRGMv2_2235_1 | HRGMv2_2235_1_183 | 198972 | 200174 | + | GT4 |
| TC | HRGMv2_2235_1 | HRGMv2_2235_1_184 | 200171 | 200950 | + | 3.A.1.103.4 |
| TC | HRGMv2_2235_1 | HRGMv2_2235_1_185 | 200950 | 202206 | + | 3.A.1.103.4 |
| NULL(UNKNOWN) | HRGMv2_2235_1 | HRGMv2_2235_1_186 | 202190 | 202543 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2235_1 | HRGMv2_2235_1_187 | 202509 | 203624 | + | GT4 |
Gene ID: HRGMv2_2235_1_182
Type: CAZyme
Location: 197857 - 198930 (+)
Type: CAZyme
Location: 197857 - 198930 (+)
Gene ID: HRGMv2_2235_1_183
Type: CAZyme
Location: 198972 - 200174 (+)
Type: CAZyme
Location: 198972 - 200174 (+)
Gene ID: HRGMv2_2235_1_184
Type: TC
Location: 200171 - 200950 (+)
Type: TC
Location: 200171 - 200950 (+)
Gene ID: HRGMv2_2235_1_185
Type: TC
Location: 200950 - 202206 (+)
Type: TC
Location: 200950 - 202206 (+)
Gene ID: HRGMv2_2235_1_186
Type:
Location: 202190 - 202543 (+)
Type:
Location: 202190 - 202543 (+)
Gene ID: HRGMv2_2235_1_187
Type: CAZyme
Location: 202509 - 203624 (+)
Type: CAZyme
Location: 202509 - 203624 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Species
Acetatifactor sp900766575
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.