Cluster: HRGMv2_2235_CGC38
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2235
- CGC Family ID: CGCFAM_06111
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2235_57 | HRGMv2_2235_57_5 | 2950 | 4491 | + | CBM91 | GH43_10 |
| TC | HRGMv2_2235_57 | HRGMv2_2235_57_6 | 4508 | 5854 | + | 2.A.66.1.23 |
| STP | HRGMv2_2235_57 | HRGMv2_2235_57_7 | 6142 | 7446 | + | Aminotran_1_2 |
| pfam | HRGMv2_2235_57 | HRGMv2_2235_57_8 | 7661 | 7981 | + | Trns_repr_metal |
| TC | HRGMv2_2235_57 | HRGMv2_2235_57_9 | 8097 | 10979 | + | 3.A.3.5.15 |
| TC | HRGMv2_2235_57 | HRGMv2_2235_57_10 | 11464 | 14064 | + | 3.A.9.1.2 |
Gene ID: HRGMv2_2235_57_5
Type: CAZyme
Location: 2950 - 4491 (+)
Type: CAZyme
Location: 2950 - 4491 (+)
Gene ID: HRGMv2_2235_57_6
Type: TC
Location: 4508 - 5854 (+)
Type: TC
Location: 4508 - 5854 (+)
Gene ID: HRGMv2_2235_57_7
Type: STP
Location: 6142 - 7446 (+)
Type: STP
Location: 6142 - 7446 (+)
Gene ID: HRGMv2_2235_57_8
Type: pfam
Location: 7661 - 7981 (+)
Type: pfam
Location: 7661 - 7981 (+)
Gene ID: HRGMv2_2235_57_9
Type: TC
Location: 8097 - 10979 (+)
Type: TC
Location: 8097 - 10979 (+)
Gene ID: HRGMv2_2235_57_10
Type: TC
Location: 11464 - 14064 (+)
Type: TC
Location: 11464 - 14064 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Species
Acetatifactor sp900766575
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2235_57_8 | vegetarian > vegan | 1.58208 | 0.00050 |