dbCAN Logo

Cluster: HRGMv2_2235_CGC36

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2235_53 HRGMv2_2235_53_7 5818 6900 - 2.A.86.1.9
pfam HRGMv2_2235_53 HRGMv2_2235_53_8 6947 7666 - PseudoU_synth_2
pfam HRGMv2_2235_53 HRGMv2_2235_53_9 7663 9105 - Methyltr_RsmB-F | Methyltranf_PUA | Methyltr_RsmF_N | RsmF_methylt_CI
CAZyme HRGMv2_2235_53 HRGMv2_2235_53_10 9282 10412 + GH5_2
pfam HRGMv2_2235_53 HRGMv2_2235_53_11 10433 10993 - DUF436
TC HRGMv2_2235_53 HRGMv2_2235_53_12 11058 12203 - 2.A.45.2.6
pfam HRGMv2_2235_53 HRGMv2_2235_53_13 12289 12885 + Mntp
TC HRGMv2_2235_53 HRGMv2_2235_53_14 12971 14431 + 9.A.11.1.1
Gene ID: HRGMv2_2235_53_7
Type: TC
Location: 5818 - 6900 (-)
Gene ID: HRGMv2_2235_53_8
Type: pfam
Location: 6947 - 7666 (-)
Gene ID: HRGMv2_2235_53_9
Type: pfam
Location: 7663 - 9105 (-)
Gene ID: HRGMv2_2235_53_10
Type: CAZyme
Location: 9282 - 10412 (+)
Gene ID: HRGMv2_2235_53_11
Type: pfam
Location: 10433 - 10993 (-)
Gene ID: HRGMv2_2235_53_12
Type: TC
Location: 11058 - 12203 (-)
Gene ID: HRGMv2_2235_53_13
Type: pfam
Location: 12289 - 12885 (+)
Gene ID: HRGMv2_2235_53_14
Type: TC
Location: 12971 - 14431 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2235_53_7 vegetarian > vegan 1.19240 0.00050

🧭 Explore Read Mapping of CGC

← Back to Cluster List