Cluster: HRGMv2_2235_CGC32
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_2235
- CGC Family ID: CGCFAM_00168
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2235_37 | HRGMv2_2235_37_8 | 9519 | 12308 | + | GH25 |
| pfam | HRGMv2_2235_37 | HRGMv2_2235_37_9 | 12407 | 13492 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| pfam | HRGMv2_2235_37 | HRGMv2_2235_37_10 | 13590 | 14459 | + | NTP_transferase | NTP_transf_3 |
| CAZyme | HRGMv2_2235_37 | HRGMv2_2235_37_11 | 14449 | 15735 | + | GH25 |
| pfam | HRGMv2_2235_37 | HRGMv2_2235_37_12 | 15787 | 16359 | + | dTDP_sugar_isom |
| TC | HRGMv2_2235_37 | HRGMv2_2235_37_13 | 16346 | 17338 | + | 3.A.1.104.1 |
| pfam | HRGMv2_2235_37 | HRGMv2_2235_37_14 | 17425 | 18951 | + | DUF6056 |
| TC | HRGMv2_2235_37 | HRGMv2_2235_37_15 | 18957 | 20297 | + | 3.A.1.103.6 |
| pfam | HRGMv2_2235_37 | HRGMv2_2235_37_16 | 20301 | 22373 | + | PCMT | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 |
| CAZyme | HRGMv2_2235_37 | HRGMv2_2235_37_17 | 22414 | 24423 | + | GT2 |
| CAZyme | HRGMv2_2235_37 | HRGMv2_2235_37_18 | 24475 | 26541 | + | GT2 |
Gene ID: HRGMv2_2235_37_8
Type: CAZyme
Location: 9519 - 12308 (+)
Type: CAZyme
Location: 9519 - 12308 (+)
Gene ID: HRGMv2_2235_37_9
Type: pfam
Location: 12407 - 13492 (+)
Type: pfam
Location: 12407 - 13492 (+)
Gene ID: HRGMv2_2235_37_10
Type: pfam
Location: 13590 - 14459 (+)
Type: pfam
Location: 13590 - 14459 (+)
Gene ID: HRGMv2_2235_37_11
Type: CAZyme
Location: 14449 - 15735 (+)
Type: CAZyme
Location: 14449 - 15735 (+)
Gene ID: HRGMv2_2235_37_12
Type: pfam
Location: 15787 - 16359 (+)
Type: pfam
Location: 15787 - 16359 (+)
Gene ID: HRGMv2_2235_37_13
Type: TC
Location: 16346 - 17338 (+)
Type: TC
Location: 16346 - 17338 (+)
Gene ID: HRGMv2_2235_37_14
Type: pfam
Location: 17425 - 18951 (+)
Type: pfam
Location: 17425 - 18951 (+)
Gene ID: HRGMv2_2235_37_15
Type: TC
Location: 18957 - 20297 (+)
Type: TC
Location: 18957 - 20297 (+)
Gene ID: HRGMv2_2235_37_16
Type: pfam
Location: 20301 - 22373 (+)
Type: pfam
Location: 20301 - 22373 (+)
Gene ID: HRGMv2_2235_37_17
Type: CAZyme
Location: 22414 - 24423 (+)
Type: CAZyme
Location: 22414 - 24423 (+)
Gene ID: HRGMv2_2235_37_18
Type: CAZyme
Location: 24475 - 26541 (+)
Type: CAZyme
Location: 24475 - 26541 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Species
Acetatifactor sp900766575
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.