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Cluster: HRGMv2_2235_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2235_34 HRGMv2_2235_34_15 16808 18550 - CBM34 | GH13_20
TC HRGMv2_2235_34 HRGMv2_2235_34_16 18569 19411 - 3.A.1.1.27
TC HRGMv2_2235_34 HRGMv2_2235_34_17 19408 20337 - 3.A.1.1.2
TC HRGMv2_2235_34 HRGMv2_2235_34_18 20380 21639 - 3.A.1.1.16
pfam HRGMv2_2235_34 HRGMv2_2235_34_19 21688 22881 - CBM26 | CBM26 | CBM26
TC HRGMv2_2235_34 HRGMv2_2235_34_20 23465 25726 - 2.A.6.4.2
Gene ID: HRGMv2_2235_34_15
Type: CAZyme
Location: 16808 - 18550 (-)
Gene ID: HRGMv2_2235_34_16
Type: TC
Location: 18569 - 19411 (-)
Gene ID: HRGMv2_2235_34_17
Type: TC
Location: 19408 - 20337 (-)
Gene ID: HRGMv2_2235_34_18
Type: TC
Location: 20380 - 21639 (-)
Gene ID: HRGMv2_2235_34_19
Type: pfam
Location: 21688 - 22881 (-)
Gene ID: HRGMv2_2235_34_20
Type: TC
Location: 23465 - 25726 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2235_34_15 vegetarian > vegan 1.15460 0.00050
HRGMv2_2235_34_16 vegetarian > vegan 1.11546 0.00050
HRGMv2_2235_34_18 vegetarian > vegan 1.14245 0.00050
HRGMv2_2235_34_19 vegetarian > vegan 1.26825 0.00050

🧭 Explore Read Mapping of CGC

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