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Cluster: HRGMv2_2235_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2235_1 HRGMv2_2235_1_160 169828 170589 + GT2
TC HRGMv2_2235_1 HRGMv2_2235_1_161 170602 172053 + 9.B.18.1.3
NULL(UNKNOWN) HRGMv2_2235_1 HRGMv2_2235_1_162 172074 173225 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2235_1 HRGMv2_2235_1_163 173222 174010 + GT2
pfam HRGMv2_2235_1 HRGMv2_2235_1_164 174031 175155 + EpsG
CAZyme HRGMv2_2235_1 HRGMv2_2235_1_165 175170 176540 + GT4
CAZyme HRGMv2_2235_1 HRGMv2_2235_1_166 176515 177717 + GT4
CAZyme HRGMv2_2235_1 HRGMv2_2235_1_167 177736 178737 + GT2
TC HRGMv2_2235_1 HRGMv2_2235_1_168 178805 180667 + 9.B.18.2.1
TC HRGMv2_2235_1 HRGMv2_2235_1_169 180672 181280 + 9.B.18.1.1
pfam HRGMv2_2235_1 HRGMv2_2235_1_170 181284 182177 + 3Beta_HSD | Epimerase | RmlD_sub_bind | NAD_binding_4
CAZyme HRGMv2_2235_1 HRGMv2_2235_1_171 182182 182940 + GT2
CAZyme HRGMv2_2235_1 HRGMv2_2235_1_172 182976 184085 + GT4
NULL(UNKNOWN) HRGMv2_2235_1 HRGMv2_2235_1_173 184178 184663 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2235_1 HRGMv2_2235_1_174 184660 185811 + GT4
NULL(UNKNOWN) HRGMv2_2235_1 HRGMv2_2235_1_175 185834 186340 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2235_1 HRGMv2_2235_1_176 186380 188860 + GT4
CAZyme HRGMv2_2235_1 HRGMv2_2235_1_177 188911 191067 + GH73
Gene ID: HRGMv2_2235_1_160
Type: CAZyme
Location: 169828 - 170589 (+)
Gene ID: HRGMv2_2235_1_161
Type: TC
Location: 170602 - 172053 (+)
Gene ID: HRGMv2_2235_1_162
Type:
Location: 172074 - 173225 (+)
Gene ID: HRGMv2_2235_1_163
Type: CAZyme
Location: 173222 - 174010 (+)
Gene ID: HRGMv2_2235_1_164
Type: pfam
Location: 174031 - 175155 (+)
Gene ID: HRGMv2_2235_1_165
Type: CAZyme
Location: 175170 - 176540 (+)
Gene ID: HRGMv2_2235_1_166
Type: CAZyme
Location: 176515 - 177717 (+)
Gene ID: HRGMv2_2235_1_167
Type: CAZyme
Location: 177736 - 178737 (+)
Gene ID: HRGMv2_2235_1_168
Type: TC
Location: 178805 - 180667 (+)
Gene ID: HRGMv2_2235_1_169
Type: TC
Location: 180672 - 181280 (+)
Gene ID: HRGMv2_2235_1_170
Type: pfam
Location: 181284 - 182177 (+)
Gene ID: HRGMv2_2235_1_171
Type: CAZyme
Location: 182182 - 182940 (+)
Gene ID: HRGMv2_2235_1_172
Type: CAZyme
Location: 182976 - 184085 (+)
Gene ID: HRGMv2_2235_1_173
Type:
Location: 184178 - 184663 (+)
Gene ID: HRGMv2_2235_1_174
Type: CAZyme
Location: 184660 - 185811 (+)
Gene ID: HRGMv2_2235_1_175
Type:
Location: 185834 - 186340 (+)
Gene ID: HRGMv2_2235_1_176
Type: CAZyme
Location: 186380 - 188860 (+)
Gene ID: HRGMv2_2235_1_177
Type: CAZyme
Location: 188911 - 191067 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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