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Cluster: HRGMv2_2235_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2235_33 HRGMv2_2235_33_6 4408 5778 + 2.A.66.1.32
TC HRGMv2_2235_33 HRGMv2_2235_33_7 6213 7151 + 2.A.19.5.2
CAZyme HRGMv2_2235_33 HRGMv2_2235_33_8 7223 8719 + GH77
pfam HRGMv2_2235_33 HRGMv2_2235_33_9 8912 9958 + Peripla_BP_4
TC HRGMv2_2235_33 HRGMv2_2235_33_10 9966 11462 + 8.A.59.2.1
TF HRGMv2_2235_33 HRGMv2_2235_33_11 11455 13065 + HTH_AraC | HTH_AraC
TC HRGMv2_2235_33 HRGMv2_2235_33_12 13070 14116 + 3.A.1.2.26
TC HRGMv2_2235_33 HRGMv2_2235_33_13 14298 15443 + 3.A.1.2.5
TC HRGMv2_2235_33 HRGMv2_2235_33_14 15576 17120 + 3.A.1.2.5
TC HRGMv2_2235_33 HRGMv2_2235_33_15 17117 18307 + 3.A.1.2.5
TC HRGMv2_2235_33 HRGMv2_2235_33_16 18409 20196 + 1.B.52.2.2
Gene ID: HRGMv2_2235_33_6
Type: TC
Location: 4408 - 5778 (+)
Gene ID: HRGMv2_2235_33_7
Type: TC
Location: 6213 - 7151 (+)
Gene ID: HRGMv2_2235_33_8
Type: CAZyme
Location: 7223 - 8719 (+)
Gene ID: HRGMv2_2235_33_9
Type: pfam
Location: 8912 - 9958 (+)
Gene ID: HRGMv2_2235_33_10
Type: TC
Location: 9966 - 11462 (+)
Gene ID: HRGMv2_2235_33_11
Type: TF
Location: 11455 - 13065 (+)
Gene ID: HRGMv2_2235_33_12
Type: TC
Location: 13070 - 14116 (+)
Gene ID: HRGMv2_2235_33_13
Type: TC
Location: 14298 - 15443 (+)
Gene ID: HRGMv2_2235_33_14
Type: TC
Location: 15576 - 17120 (+)
Gene ID: HRGMv2_2235_33_15
Type: TC
Location: 17117 - 18307 (+)
Gene ID: HRGMv2_2235_33_16
Type: TC
Location: 18409 - 20196 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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