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Cluster: HRGMv2_2235_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2235_29 HRGMv2_2235_29_4 3497 4939 - 1.B.52.2.1
TC HRGMv2_2235_29 HRGMv2_2235_29_5 5139 6884 - 1.B.52.2.1
TC HRGMv2_2235_29 HRGMv2_2235_29_6 7083 8417 - 2.A.66.1.33
TC HRGMv2_2235_29 HRGMv2_2235_29_7 8487 9899 - 2.A.25.1.4
TC HRGMv2_2235_29 HRGMv2_2235_29_8 10295 11632 - 2.A.66.1.33
pfam HRGMv2_2235_29 HRGMv2_2235_29_9 11677 14712 - DUF2726 | AAA_11 | AAA_12 | AAA_19
TC HRGMv2_2235_29 HRGMv2_2235_29_10 15163 16503 - 2.A.66.1.28
TF HRGMv2_2235_29 HRGMv2_2235_29_11 16490 16945 - MarR
CAZyme HRGMv2_2235_29 HRGMv2_2235_29_12 17134 18444 - GH28
Gene ID: HRGMv2_2235_29_4
Type: TC
Location: 3497 - 4939 (-)
Gene ID: HRGMv2_2235_29_5
Type: TC
Location: 5139 - 6884 (-)
Gene ID: HRGMv2_2235_29_6
Type: TC
Location: 7083 - 8417 (-)
Gene ID: HRGMv2_2235_29_7
Type: TC
Location: 8487 - 9899 (-)
Gene ID: HRGMv2_2235_29_8
Type: TC
Location: 10295 - 11632 (-)
Gene ID: HRGMv2_2235_29_9
Type: pfam
Location: 11677 - 14712 (-)
Gene ID: HRGMv2_2235_29_10
Type: TC
Location: 15163 - 16503 (-)
Gene ID: HRGMv2_2235_29_11
Type: TF
Location: 16490 - 16945 (-)
Gene ID: HRGMv2_2235_29_12
Type: CAZyme
Location: 17134 - 18444 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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