Cluster: HRGMv2_2235_CGC22
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2235
- CGC Family ID: CGCFAM_01676
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2235_18 | HRGMv2_2235_18_8 | 11494 | 13050 | + | GH28 |
| pfam | HRGMv2_2235_18 | HRGMv2_2235_18_9 | 13097 | 13933 | + | AP_endonuc_2 |
| pfam | HRGMv2_2235_18 | HRGMv2_2235_18_10 | 14057 | 14815 | + | ThiF |
| TC | HRGMv2_2235_18 | HRGMv2_2235_18_11 | 15023 | 16786 | + | 1.B.52.2.1 |
| TC | HRGMv2_2235_18 | HRGMv2_2235_18_12 | 16905 | 18254 | + | 2.A.66.1.33 |
Gene ID: HRGMv2_2235_18_8
Type: CAZyme
Location: 11494 - 13050 (+)
Type: CAZyme
Location: 11494 - 13050 (+)
Gene ID: HRGMv2_2235_18_9
Type: pfam
Location: 13097 - 13933 (+)
Type: pfam
Location: 13097 - 13933 (+)
Gene ID: HRGMv2_2235_18_10
Type: pfam
Location: 14057 - 14815 (+)
Type: pfam
Location: 14057 - 14815 (+)
Gene ID: HRGMv2_2235_18_11
Type: TC
Location: 15023 - 16786 (+)
Type: TC
Location: 15023 - 16786 (+)
Gene ID: HRGMv2_2235_18_12
Type: TC
Location: 16905 - 18254 (+)
Type: TC
Location: 16905 - 18254 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Species
Acetatifactor sp900766575
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.