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Cluster: HRGMv2_2235_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2235_15 HRGMv2_2235_15_19 24055 25665 - 9.B.142.3.8
CAZyme HRGMv2_2235_15 HRGMv2_2235_15_20 25820 26761 + GT2
pfam HRGMv2_2235_15 HRGMv2_2235_15_21 26763 28484 + DUF6020
pfam HRGMv2_2235_15 HRGMv2_2235_15_22 28477 29607 + DAO | NAD_binding_8
CAZyme HRGMv2_2235_15 HRGMv2_2235_15_23 29635 30594 + GT2
CAZyme HRGMv2_2235_15 HRGMv2_2235_15_24 30591 31316 + GT2
STP HRGMv2_2235_15 HRGMv2_2235_15_25 31353 32459 + Aminotran_1_2
pfam HRGMv2_2235_15 HRGMv2_2235_15_26 32479 33069 + Acetyltransf_1 | Acetyltransf_3 | Acetyltransf_4 | Acetyltransf_8
CAZyme HRGMv2_2235_15 HRGMv2_2235_15_27 33079 34035 + GT2
Gene ID: HRGMv2_2235_15_19
Type: TC
Location: 24055 - 25665 (-)
Gene ID: HRGMv2_2235_15_20
Type: CAZyme
Location: 25820 - 26761 (+)
Gene ID: HRGMv2_2235_15_21
Type: pfam
Location: 26763 - 28484 (+)
Gene ID: HRGMv2_2235_15_22
Type: pfam
Location: 28477 - 29607 (+)
Gene ID: HRGMv2_2235_15_23
Type: CAZyme
Location: 29635 - 30594 (+)
Gene ID: HRGMv2_2235_15_24
Type: CAZyme
Location: 30591 - 31316 (+)
Gene ID: HRGMv2_2235_15_25
Type: STP
Location: 31353 - 32459 (+)
Gene ID: HRGMv2_2235_15_26
Type: pfam
Location: 32479 - 33069 (+)
Gene ID: HRGMv2_2235_15_27
Type: CAZyme
Location: 33079 - 34035 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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