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Cluster: HRGMv2_2235_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2235_1 HRGMv2_2235_1_26 21895 23262 - 3.A.1.121.4
TF HRGMv2_2235_1 HRGMv2_2235_1_27 23522 24283 + 0043758
TC HRGMv2_2235_1 HRGMv2_2235_1_28 24401 25306 + 3.A.1.1.10
TC HRGMv2_2235_1 HRGMv2_2235_1_29 25317 26204 + 3.A.1.1.10
STP HRGMv2_2235_1 HRGMv2_2235_1_30 26253 27935 + SBP_bac_1
CAZyme HRGMv2_2235_1 HRGMv2_2235_1_31 28024 29088 + GH33
CAZyme HRGMv2_2235_1 HRGMv2_2235_1_32 29091 32228 + GH106
Gene ID: HRGMv2_2235_1_26
Type: TC
Location: 21895 - 23262 (-)
Gene ID: HRGMv2_2235_1_27
Type: TF
Location: 23522 - 24283 (+)
Gene ID: HRGMv2_2235_1_28
Type: TC
Location: 24401 - 25306 (+)
Gene ID: HRGMv2_2235_1_29
Type: TC
Location: 25317 - 26204 (+)
Gene ID: HRGMv2_2235_1_30
Type: STP
Location: 26253 - 27935 (+)
Gene ID: HRGMv2_2235_1_31
Type: CAZyme
Location: 28024 - 29088 (+)
Gene ID: HRGMv2_2235_1_32
Type: CAZyme
Location: 29091 - 32228 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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