dbCAN Logo

Cluster: HRGMv2_2235_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2235_13 HRGMv2_2235_13_14 17752 18762 + 3.A.1.1.20
TC HRGMv2_2235_13 HRGMv2_2235_13_15 18764 19630 + 3.A.1.1.47
pfam HRGMv2_2235_13 HRGMv2_2235_13_16 19646 20830 + GlcNAc_2-epim
CAZyme HRGMv2_2235_13 HRGMv2_2235_13_17 20824 21999 + GH130_1
CAZyme HRGMv2_2235_13 HRGMv2_2235_13_18 22025 23047 + GH130_2
CAZyme HRGMv2_2235_13 HRGMv2_2235_13_19 23099 26179 + CBM35inCE17 | CE17
pfam HRGMv2_2235_13 HRGMv2_2235_13_20 26250 27188 + PMI_typeI_cat | MPI_cupin_dom
TF HRGMv2_2235_13 HRGMv2_2235_13_21 27241 28035 - HTH_AraC
CAZyme HRGMv2_2235_13 HRGMv2_2235_13_22 28156 29511 + GH28
CAZyme HRGMv2_2235_13 HRGMv2_2235_13_23 29580 30731 + GH88
pfam HRGMv2_2235_13 HRGMv2_2235_13_24 30787 31668 + ROK
CAZyme HRGMv2_2235_13 HRGMv2_2235_13_25 31656 33707 + GH31_14
NULL(UNKNOWN) HRGMv2_2235_13 HRGMv2_2235_13_26 33791 34594 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2235_13 HRGMv2_2235_13_27 34598 35503 + GH43_24
CAZyme HRGMv2_2235_13 HRGMv2_2235_13_28 35526 37163 + CBM91 | GH43_11
STP HRGMv2_2235_13 HRGMv2_2235_13_29 37318 38706 + SBP_bac_1
TC HRGMv2_2235_13 HRGMv2_2235_13_30 38788 39672 + 3.A.1.1.7
TC HRGMv2_2235_13 HRGMv2_2235_13_31 39672 40529 + 3.A.1.1.45
TC HRGMv2_2235_13 HRGMv2_2235_13_32 40690 42540 + 8.A.59.2.1
Gene ID: HRGMv2_2235_13_14
Type: TC
Location: 17752 - 18762 (+)
Gene ID: HRGMv2_2235_13_15
Type: TC
Location: 18764 - 19630 (+)
Gene ID: HRGMv2_2235_13_16
Type: pfam
Location: 19646 - 20830 (+)
Gene ID: HRGMv2_2235_13_17
Type: CAZyme
Location: 20824 - 21999 (+)
Gene ID: HRGMv2_2235_13_18
Type: CAZyme
Location: 22025 - 23047 (+)
Gene ID: HRGMv2_2235_13_19
Type: CAZyme
Location: 23099 - 26179 (+)
Gene ID: HRGMv2_2235_13_20
Type: pfam
Location: 26250 - 27188 (+)
Gene ID: HRGMv2_2235_13_21
Type: TF
Location: 27241 - 28035 (-)
Gene ID: HRGMv2_2235_13_22
Type: CAZyme
Location: 28156 - 29511 (+)
Gene ID: HRGMv2_2235_13_23
Type: CAZyme
Location: 29580 - 30731 (+)
Gene ID: HRGMv2_2235_13_24
Type: pfam
Location: 30787 - 31668 (+)
Gene ID: HRGMv2_2235_13_25
Type: CAZyme
Location: 31656 - 33707 (+)
Gene ID: HRGMv2_2235_13_26
Type:
Location: 33791 - 34594 (+)
Gene ID: HRGMv2_2235_13_27
Type: CAZyme
Location: 34598 - 35503 (+)
Gene ID: HRGMv2_2235_13_28
Type: CAZyme
Location: 35526 - 37163 (+)
Gene ID: HRGMv2_2235_13_29
Type: STP
Location: 37318 - 38706 (+)
Gene ID: HRGMv2_2235_13_30
Type: TC
Location: 38788 - 39672 (+)
Gene ID: HRGMv2_2235_13_31
Type: TC
Location: 39672 - 40529 (+)
Gene ID: HRGMv2_2235_13_32
Type: TC
Location: 40690 - 42540 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2235_13_29 vegetarian > vegan 1.29863 0.00050
HRGMv2_2235_13_30 vegetarian > vegan 1.07438 0.00050
HRGMv2_2235_13_31 vegetarian > vegan 1.49286 0.00050

🧭 Explore Read Mapping of CGC

← Back to Cluster List