Cluster: HRGMv2_2234_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2234
- CGC Family ID: CGCFAM_01578
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2234_10 | HRGMv2_2234_10_35 | 37475 | 38332 | - | 3.A.1.1.26 |
| TC | HRGMv2_2234_10 | HRGMv2_2234_10_36 | 38344 | 39258 | - | 3.A.1.1.4 |
| NULL(UNKNOWN) | HRGMv2_2234_10 | HRGMv2_2234_10_37 | 39335 | 40765 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_2234_10 | HRGMv2_2234_10_38 | 40865 | 41887 | - | LacI |
| CAZyme | HRGMv2_2234_10 | HRGMv2_2234_10_39 | 42234 | 44669 | + | GH94 |
| TC | HRGMv2_2234_10 | HRGMv2_2234_10_40 | 44725 | 45369 | - | 1.A.62.2.1 |
| TC | HRGMv2_2234_10 | HRGMv2_2234_10_41 | 45380 | 47083 | - | 1.B.52.2.1 |
Gene ID: HRGMv2_2234_10_35
Type: TC
Location: 37475 - 38332 (-)
Type: TC
Location: 37475 - 38332 (-)
Gene ID: HRGMv2_2234_10_36
Type: TC
Location: 38344 - 39258 (-)
Type: TC
Location: 38344 - 39258 (-)
Gene ID: HRGMv2_2234_10_37
Type:
Location: 39335 - 40765 (-)
Type:
Location: 39335 - 40765 (-)
Gene ID: HRGMv2_2234_10_38
Type: TF
Location: 40865 - 41887 (-)
Type: TF
Location: 40865 - 41887 (-)
Gene ID: HRGMv2_2234_10_39
Type: CAZyme
Location: 42234 - 44669 (+)
Type: CAZyme
Location: 42234 - 44669 (+)
Gene ID: HRGMv2_2234_10_40
Type: TC
Location: 44725 - 45369 (-)
Type: TC
Location: 44725 - 45369 (-)
Gene ID: HRGMv2_2234_10_41
Type: TC
Location: 45380 - 47083 (-)
Type: TC
Location: 45380 - 47083 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
W0P33-017
Species
W0P33-017 sp934351445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.