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Cluster: HRGMv2_2225_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2225_17 HRGMv2_2225_17_8 15539 16876 + 2.A.66.1.33
TF HRGMv2_2225_17 HRGMv2_2225_17_9 16911 17330 - MarR
CAZyme HRGMv2_2225_17 HRGMv2_2225_17_10 17481 19796 + CE1 | CE1
TC HRGMv2_2225_17 HRGMv2_2225_17_11 19837 21258 + 2.A.66.1.47
TC HRGMv2_2225_17 HRGMv2_2225_17_12 21525 22448 + 3.A.1.1.29
TC HRGMv2_2225_17 HRGMv2_2225_17_13 22462 23391 + 3.A.1.1.29
NULL(UNKNOWN) HRGMv2_2225_17 HRGMv2_2225_17_14 23461 25221 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2225_17 HRGMv2_2225_17_15 25324 27303 + GH120
TF HRGMv2_2225_17 HRGMv2_2225_17_16 27318 28370 + LacI
CAZyme HRGMv2_2225_17 HRGMv2_2225_17_17 28386 30236 + GH36
NULL(UNKNOWN) HRGMv2_2225_17 HRGMv2_2225_17_18 30374 30796 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2225_17 HRGMv2_2225_17_19 30886 32241 + 2.A.45.2.2
pfam HRGMv2_2225_17 HRGMv2_2225_17_20 32264 32857 + Cytidylate_kin2
CAZyme HRGMv2_2225_17 HRGMv2_2225_17_21 32940 34223 + GH5_4
TC HRGMv2_2225_17 HRGMv2_2225_17_22 34419 36188 + 3.A.1.106.3
TC HRGMv2_2225_17 HRGMv2_2225_17_23 36191 37972 + 3.A.1.106.3
CAZyme HRGMv2_2225_17 HRGMv2_2225_17_24 37987 40101 + GH154
Gene ID: HRGMv2_2225_17_8
Type: TC
Location: 15539 - 16876 (+)
Gene ID: HRGMv2_2225_17_9
Type: TF
Location: 16911 - 17330 (-)
Gene ID: HRGMv2_2225_17_10
Type: CAZyme
Location: 17481 - 19796 (+)
Gene ID: HRGMv2_2225_17_11
Type: TC
Location: 19837 - 21258 (+)
Gene ID: HRGMv2_2225_17_12
Type: TC
Location: 21525 - 22448 (+)
Gene ID: HRGMv2_2225_17_13
Type: TC
Location: 22462 - 23391 (+)
Gene ID: HRGMv2_2225_17_14
Type:
Location: 23461 - 25221 (+)
Gene ID: HRGMv2_2225_17_15
Type: CAZyme
Location: 25324 - 27303 (+)
Gene ID: HRGMv2_2225_17_16
Type: TF
Location: 27318 - 28370 (+)
Gene ID: HRGMv2_2225_17_17
Type: CAZyme
Location: 28386 - 30236 (+)
Gene ID: HRGMv2_2225_17_18
Type:
Location: 30374 - 30796 (+)
Gene ID: HRGMv2_2225_17_19
Type: TC
Location: 30886 - 32241 (+)
Gene ID: HRGMv2_2225_17_20
Type: pfam
Location: 32264 - 32857 (+)
Gene ID: HRGMv2_2225_17_21
Type: CAZyme
Location: 32940 - 34223 (+)
Gene ID: HRGMv2_2225_17_22
Type: TC
Location: 34419 - 36188 (+)
Gene ID: HRGMv2_2225_17_23
Type: TC
Location: 36191 - 37972 (+)
Gene ID: HRGMv2_2225_17_24
Type: CAZyme
Location: 37987 - 40101 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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