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Cluster: HRGMv2_2222_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2222_6 HRGMv2_2222_6_38 50013 50903 - 3.A.1.1.39
TC HRGMv2_2222_6 HRGMv2_2222_6_39 50906 51847 - 3.A.1.1.11
STP HRGMv2_2222_6 HRGMv2_2222_6_40 51863 54874 - SBP_bac_1
TC HRGMv2_2222_6 HRGMv2_2222_6_41 54918 55565 - 9.B.28.1.8
CAZyme HRGMv2_2222_6 HRGMv2_2222_6_42 55562 57085 - CBM35 | GH26
CAZyme HRGMv2_2222_6 HRGMv2_2222_6_43 57339 58637 - CE17
TF HRGMv2_2222_6 HRGMv2_2222_6_44 58724 59746 - LacI
CAZyme HRGMv2_2222_6 HRGMv2_2222_6_45 59746 61935 - GH36
CAZyme HRGMv2_2222_6 HRGMv2_2222_6_46 62003 63505 - GH26
pfam HRGMv2_2222_6 HRGMv2_2222_6_47 63680 64465 - TatD_DNase | Amidohydro_2
NULL(UNKNOWN) HRGMv2_2222_6 HRGMv2_2222_6_48 64521 65045 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2222_6 HRGMv2_2222_6_49 65042 65686 - 3.A.1.141.1
TF HRGMv2_2222_6 HRGMv2_2222_6_50 65774 66145 - GntR
NULL(UNKNOWN) HRGMv2_2222_6 HRGMv2_2222_6_51 66160 66918 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2222_6 HRGMv2_2222_6_52 66919 67773 - 3.A.1.149.1
Gene ID: HRGMv2_2222_6_38
Type: TC
Location: 50013 - 50903 (-)
Gene ID: HRGMv2_2222_6_39
Type: TC
Location: 50906 - 51847 (-)
Gene ID: HRGMv2_2222_6_40
Type: STP
Location: 51863 - 54874 (-)
Gene ID: HRGMv2_2222_6_41
Type: TC
Location: 54918 - 55565 (-)
Gene ID: HRGMv2_2222_6_42
Type: CAZyme
Location: 55562 - 57085 (-)
Gene ID: HRGMv2_2222_6_43
Type: CAZyme
Location: 57339 - 58637 (-)
Gene ID: HRGMv2_2222_6_44
Type: TF
Location: 58724 - 59746 (-)
Gene ID: HRGMv2_2222_6_45
Type: CAZyme
Location: 59746 - 61935 (-)
Gene ID: HRGMv2_2222_6_46
Type: CAZyme
Location: 62003 - 63505 (-)
Gene ID: HRGMv2_2222_6_47
Type: pfam
Location: 63680 - 64465 (-)
Gene ID: HRGMv2_2222_6_48
Type:
Location: 64521 - 65045 (-)
Gene ID: HRGMv2_2222_6_49
Type: TC
Location: 65042 - 65686 (-)
Gene ID: HRGMv2_2222_6_50
Type: TF
Location: 65774 - 66145 (-)
Gene ID: HRGMv2_2222_6_51
Type:
Location: 66160 - 66918 (-)
Gene ID: HRGMv2_2222_6_52
Type: TC
Location: 66919 - 67773 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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