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Cluster: HRGMv2_2222_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2222_6 HRGMv2_2222_6_23 29124 32129 + GH2
CAZyme HRGMv2_2222_6 HRGMv2_2222_6_24 32185 33306 - CBM35inCE17 | CE17
CAZyme HRGMv2_2222_6 HRGMv2_2222_6_25 33309 34361 - CE2
CAZyme HRGMv2_2222_6 HRGMv2_2222_6_26 34428 35597 - GH130_1
pfam HRGMv2_2222_6 HRGMv2_2222_6_27 35611 36837 - GlcNAc_2-epim
CAZyme HRGMv2_2222_6 HRGMv2_2222_6_28 36866 38110 - GH5_4
CAZyme HRGMv2_2222_6 HRGMv2_2222_6_29 38211 39233 - GH130_2
TC HRGMv2_2222_6 HRGMv2_2222_6_30 39258 39917 - 9.B.28.1.2
STP HRGMv2_2222_6 HRGMv2_2222_6_31 40004 41560 - SBP_bac_1
pfam HRGMv2_2222_6 HRGMv2_2222_6_32 41629 43539 - CBM65_1 | CBM65_1 | CBM65_1
TC HRGMv2_2222_6 HRGMv2_2222_6_33 43598 44569 - 3.A.1.1.11
Gene ID: HRGMv2_2222_6_23
Type: CAZyme
Location: 29124 - 32129 (+)
Gene ID: HRGMv2_2222_6_24
Type: CAZyme
Location: 32185 - 33306 (-)
Gene ID: HRGMv2_2222_6_25
Type: CAZyme
Location: 33309 - 34361 (-)
Gene ID: HRGMv2_2222_6_26
Type: CAZyme
Location: 34428 - 35597 (-)
Gene ID: HRGMv2_2222_6_27
Type: pfam
Location: 35611 - 36837 (-)
Gene ID: HRGMv2_2222_6_28
Type: CAZyme
Location: 36866 - 38110 (-)
Gene ID: HRGMv2_2222_6_29
Type: CAZyme
Location: 38211 - 39233 (-)
Gene ID: HRGMv2_2222_6_30
Type: TC
Location: 39258 - 39917 (-)
Gene ID: HRGMv2_2222_6_31
Type: STP
Location: 40004 - 41560 (-)
Gene ID: HRGMv2_2222_6_32
Type: pfam
Location: 41629 - 43539 (-)
Gene ID: HRGMv2_2222_6_33
Type: TC
Location: 43598 - 44569 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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