dbCAN Logo

Cluster: HRGMv2_2222_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2222_42 HRGMv2_2222_42_11 12131 13516 + 2.A.66.1.33
TC HRGMv2_2222_42 HRGMv2_2222_42_12 13513 14436 - 2.A.4.7.9
pfam HRGMv2_2222_42 HRGMv2_2222_42_13 14727 16262 - GalP_UDP_transf | GalP_UDP_tr_C
pfam HRGMv2_2222_42 HRGMv2_2222_42_14 16290 17456 - GHMP_kinases_N | GHMP_kinases_C | GalKase_gal_bdg
CAZyme HRGMv2_2222_42 HRGMv2_2222_42_15 17623 18213 - CE4
NULL(UNKNOWN) HRGMv2_2222_42 HRGMv2_2222_42_16 18350 19240 - NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_2222_42 HRGMv2_2222_42_17 19395 19766 - HTH_5
TC HRGMv2_2222_42 HRGMv2_2222_42_18 19857 21764 - 3.A.3.6.10
Gene ID: HRGMv2_2222_42_11
Type: TC
Location: 12131 - 13516 (+)
Gene ID: HRGMv2_2222_42_12
Type: TC
Location: 13513 - 14436 (-)
Gene ID: HRGMv2_2222_42_13
Type: pfam
Location: 14727 - 16262 (-)
Gene ID: HRGMv2_2222_42_14
Type: pfam
Location: 16290 - 17456 (-)
Gene ID: HRGMv2_2222_42_15
Type: CAZyme
Location: 17623 - 18213 (-)
Gene ID: HRGMv2_2222_42_16
Type:
Location: 18350 - 19240 (-)
Gene ID: HRGMv2_2222_42_17
Type: TF
Location: 19395 - 19766 (-)
Gene ID: HRGMv2_2222_42_18
Type: TC
Location: 19857 - 21764 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List