Cluster: HRGMv2_2222_CGC28
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2222
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2222_38 | HRGMv2_2222_38_17 | 18198 | 18860 | + | 9.B.28.1.8 |
| TC | HRGMv2_2222_38 | HRGMv2_2222_38_18 | 18857 | 20452 | - | 2.A.36.6.11 |
| TC | HRGMv2_2222_38 | HRGMv2_2222_38_19 | 20768 | 21685 | + | 2.A.19.5.2 |
| TF | HRGMv2_2222_38 | HRGMv2_2222_38_20 | 21772 | 22320 | + | SpoVT_AbrB |
| CAZyme | HRGMv2_2222_38 | HRGMv2_2222_38_21 | 22366 | 24702 | + | GT51 |
Gene ID: HRGMv2_2222_38_17
Type: TC
Location: 18198 - 18860 (+)
Type: TC
Location: 18198 - 18860 (+)
Gene ID: HRGMv2_2222_38_18
Type: TC
Location: 18857 - 20452 (-)
Type: TC
Location: 18857 - 20452 (-)
Gene ID: HRGMv2_2222_38_19
Type: TC
Location: 20768 - 21685 (+)
Type: TC
Location: 20768 - 21685 (+)
Gene ID: HRGMv2_2222_38_20
Type: TF
Location: 21772 - 22320 (+)
Type: TF
Location: 21772 - 22320 (+)
Gene ID: HRGMv2_2222_38_21
Type: CAZyme
Location: 22366 - 24702 (+)
Type: CAZyme
Location: 22366 - 24702 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter sp934307695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.