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Cluster: HRGMv2_2222_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2222_35 HRGMv2_2222_35_13 12450 13070 - 2.A.115.2.14
TF HRGMv2_2222_35 HRGMv2_2222_35_14 13198 14082 + HTH_1
TF HRGMv2_2222_35 HRGMv2_2222_35_15 14087 15127 - LacI
CAZyme HRGMv2_2222_35 HRGMv2_2222_35_16 15131 16855 - CBM34 | GH13_20
TC HRGMv2_2222_35 HRGMv2_2222_35_17 16881 17723 - 3.A.1.1.6
TC HRGMv2_2222_35 HRGMv2_2222_35_18 17720 18562 - 3.A.1.1.22
TC HRGMv2_2222_35 HRGMv2_2222_35_19 18640 19857 - 3.A.1.1.16
pfam HRGMv2_2222_35 HRGMv2_2222_35_20 19936 21168 - CBM26 | CBM26 | CBM26
CAZyme HRGMv2_2222_35 HRGMv2_2222_35_21 21728 23512 + CBM13 | GH53
Gene ID: HRGMv2_2222_35_13
Type: TC
Location: 12450 - 13070 (-)
Gene ID: HRGMv2_2222_35_14
Type: TF
Location: 13198 - 14082 (+)
Gene ID: HRGMv2_2222_35_15
Type: TF
Location: 14087 - 15127 (-)
Gene ID: HRGMv2_2222_35_16
Type: CAZyme
Location: 15131 - 16855 (-)
Gene ID: HRGMv2_2222_35_17
Type: TC
Location: 16881 - 17723 (-)
Gene ID: HRGMv2_2222_35_18
Type: TC
Location: 17720 - 18562 (-)
Gene ID: HRGMv2_2222_35_19
Type: TC
Location: 18640 - 19857 (-)
Gene ID: HRGMv2_2222_35_20
Type: pfam
Location: 19936 - 21168 (-)
Gene ID: HRGMv2_2222_35_21
Type: CAZyme
Location: 21728 - 23512 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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