Cluster: HRGMv2_2222_CGC26
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2222
- CGC Family ID: CGCFAM_00650
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2222_33 | HRGMv2_2222_33_21 | 24306 | 25775 | - | 4.A.1.1.7 |
| TC | HRGMv2_2222_33 | HRGMv2_2222_33_22 | 25846 | 26325 | - | 4.A.1.2.2 |
| CAZyme | HRGMv2_2222_33 | HRGMv2_2222_33_23 | 26319 | 27449 | - | CE9 |
| pfam | HRGMv2_2222_33 | HRGMv2_2222_33_24 | 27466 | 28179 | - | Glucosamine_iso |
| TC | HRGMv2_2222_33 | HRGMv2_2222_33_25 | 28220 | 29839 | - | 8.A.7.1.1 |
Gene ID: HRGMv2_2222_33_21
Type: TC
Location: 24306 - 25775 (-)
Type: TC
Location: 24306 - 25775 (-)
Gene ID: HRGMv2_2222_33_22
Type: TC
Location: 25846 - 26325 (-)
Type: TC
Location: 25846 - 26325 (-)
Gene ID: HRGMv2_2222_33_23
Type: CAZyme
Location: 26319 - 27449 (-)
Type: CAZyme
Location: 26319 - 27449 (-)
Gene ID: HRGMv2_2222_33_24
Type: pfam
Location: 27466 - 28179 (-)
Type: pfam
Location: 27466 - 28179 (-)
Gene ID: HRGMv2_2222_33_25
Type: TC
Location: 28220 - 29839 (-)
Type: TC
Location: 28220 - 29839 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter sp934307695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.