Cluster: HRGMv2_2222_CGC25
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate: alpha-glucan
- Genome ID: HRGMv2_2222
- CGC Family ID: CGCFAM_00106
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2222_30 | HRGMv2_2222_30_5 | 5804 | 7300 | + | GH77 |
| pfam | HRGMv2_2222_30 | HRGMv2_2222_30_6 | 7374 | 8990 | + | SBP_bac_1 | SBP_bac_8 | SusF_SusE |
| TC | HRGMv2_2222_30 | HRGMv2_2222_30_7 | 9091 | 10611 | + | 3.A.1.1.27 |
| TC | HRGMv2_2222_30 | HRGMv2_2222_30_8 | 10611 | 11495 | + | 3.A.1.1.27 |
| CAZyme | HRGMv2_2222_30 | HRGMv2_2222_30_9 | 11560 | 13245 | + | GH13_36 |
| TC | HRGMv2_2222_30 | HRGMv2_2222_30_10 | 13264 | 15453 | + | 1.B.52.2.1 |
Gene ID: HRGMv2_2222_30_5
Type: CAZyme
Location: 5804 - 7300 (+)
Type: CAZyme
Location: 5804 - 7300 (+)
Gene ID: HRGMv2_2222_30_6
Type: pfam
Location: 7374 - 8990 (+)
Type: pfam
Location: 7374 - 8990 (+)
Gene ID: HRGMv2_2222_30_7
Type: TC
Location: 9091 - 10611 (+)
Type: TC
Location: 9091 - 10611 (+)
Gene ID: HRGMv2_2222_30_8
Type: TC
Location: 10611 - 11495 (+)
Type: TC
Location: 10611 - 11495 (+)
Gene ID: HRGMv2_2222_30_9
Type: CAZyme
Location: 11560 - 13245 (+)
Type: CAZyme
Location: 11560 - 13245 (+)
Gene ID: HRGMv2_2222_30_10
Type: TC
Location: 13264 - 15453 (+)
Type: TC
Location: 13264 - 15453 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter sp934307695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.