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Cluster: HRGMv2_2222_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2222_28 HRGMv2_2222_28_7 6381 7247 + GH23
NULL(UNKNOWN) HRGMv2_2222_28 HRGMv2_2222_28_8 7442 8473 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2222_28 HRGMv2_2222_28_9 8495 9943 - GH43_4
TF HRGMv2_2222_28 HRGMv2_2222_28_10 10152 11081 + HTH_5
CAZyme HRGMv2_2222_28 HRGMv2_2222_28_11 11338 12846 - GH51_1
CAZyme HRGMv2_2222_28 HRGMv2_2222_28_12 12893 13843 - GH43_26
NULL(UNKNOWN) HRGMv2_2222_28 HRGMv2_2222_28_13 13893 14180 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2222_28 HRGMv2_2222_28_14 14196 16358 - GH43_4
NULL(UNKNOWN) HRGMv2_2222_28 HRGMv2_2222_28_15 16505 18529 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_2222_28 HRGMv2_2222_28_16 18611 20140 - SBP_bac_8
TC HRGMv2_2222_28 HRGMv2_2222_28_17 20202 21158 - 3.A.1.1.11
TC HRGMv2_2222_28 HRGMv2_2222_28_18 21139 22188 - 3.A.1.1.4
pfam HRGMv2_2222_28 HRGMv2_2222_28_19 22192 24378 - DUF5696
pfam HRGMv2_2222_28 HRGMv2_2222_28_20 24368 26428 - Yip1
TC HRGMv2_2222_28 HRGMv2_2222_28_21 26446 27324 - 3.A.1.1.39
TC HRGMv2_2222_28 HRGMv2_2222_28_22 27343 28254 - 3.A.1.1.34
STP HRGMv2_2222_28 HRGMv2_2222_28_23 28280 31261 - SBP_bac_1
CAZyme HRGMv2_2222_28 HRGMv2_2222_28_24 31622 35329 - GH51_2
TC HRGMv2_2222_28 HRGMv2_2222_28_25 35445 36620 - 2.A.36.2.1
Gene ID: HRGMv2_2222_28_7
Type: CAZyme
Location: 6381 - 7247 (+)
Gene ID: HRGMv2_2222_28_8
Type:
Location: 7442 - 8473 (+)
Gene ID: HRGMv2_2222_28_9
Type: CAZyme
Location: 8495 - 9943 (-)
Gene ID: HRGMv2_2222_28_10
Type: TF
Location: 10152 - 11081 (+)
Gene ID: HRGMv2_2222_28_11
Type: CAZyme
Location: 11338 - 12846 (-)
Gene ID: HRGMv2_2222_28_12
Type: CAZyme
Location: 12893 - 13843 (-)
Gene ID: HRGMv2_2222_28_13
Type:
Location: 13893 - 14180 (-)
Gene ID: HRGMv2_2222_28_14
Type: CAZyme
Location: 14196 - 16358 (-)
Gene ID: HRGMv2_2222_28_15
Type:
Location: 16505 - 18529 (-)
Gene ID: HRGMv2_2222_28_16
Type: pfam
Location: 18611 - 20140 (-)
Gene ID: HRGMv2_2222_28_17
Type: TC
Location: 20202 - 21158 (-)
Gene ID: HRGMv2_2222_28_18
Type: TC
Location: 21139 - 22188 (-)
Gene ID: HRGMv2_2222_28_19
Type: pfam
Location: 22192 - 24378 (-)
Gene ID: HRGMv2_2222_28_20
Type: pfam
Location: 24368 - 26428 (-)
Gene ID: HRGMv2_2222_28_21
Type: TC
Location: 26446 - 27324 (-)
Gene ID: HRGMv2_2222_28_22
Type: TC
Location: 27343 - 28254 (-)
Gene ID: HRGMv2_2222_28_23
Type: STP
Location: 28280 - 31261 (-)
Gene ID: HRGMv2_2222_28_24
Type: CAZyme
Location: 31622 - 35329 (-)
Gene ID: HRGMv2_2222_28_25
Type: TC
Location: 35445 - 36620 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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