Cluster: HRGMv2_2222_CGC23
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2222
- CGC Family ID: CGCFAM_00091
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2222_26 | HRGMv2_2222_26_16 | 14639 | 15733 | + | GT4 |
| CAZyme | HRGMv2_2222_26 | HRGMv2_2222_26_17 | 15720 | 16841 | + | GT4 |
| pfam | HRGMv2_2222_26 | HRGMv2_2222_26_18 | 16857 | 17975 | + | Glycos_transf_1 | Glyco_trans_1_4 |
| pfam | HRGMv2_2222_26 | HRGMv2_2222_26_19 | 17978 | 19048 | + | EpsG |
| CAZyme | HRGMv2_2222_26 | HRGMv2_2222_26_20 | 19074 | 20213 | + | GT4 |
| TC | HRGMv2_2222_26 | HRGMv2_2222_26_21 | 20218 | 21744 | + | 2.A.66.1.40 |
Gene ID: HRGMv2_2222_26_16
Type: CAZyme
Location: 14639 - 15733 (+)
Type: CAZyme
Location: 14639 - 15733 (+)
Gene ID: HRGMv2_2222_26_17
Type: CAZyme
Location: 15720 - 16841 (+)
Type: CAZyme
Location: 15720 - 16841 (+)
Gene ID: HRGMv2_2222_26_18
Type: pfam
Location: 16857 - 17975 (+)
Type: pfam
Location: 16857 - 17975 (+)
Gene ID: HRGMv2_2222_26_19
Type: pfam
Location: 17978 - 19048 (+)
Type: pfam
Location: 17978 - 19048 (+)
Gene ID: HRGMv2_2222_26_20
Type: CAZyme
Location: 19074 - 20213 (+)
Type: CAZyme
Location: 19074 - 20213 (+)
Gene ID: HRGMv2_2222_26_21
Type: TC
Location: 20218 - 21744 (+)
Type: TC
Location: 20218 - 21744 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter sp934307695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.