Cluster: HRGMv2_2222_CGC22
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2222
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2222_26 | HRGMv2_2222_26_1 | 1161 | 1907 | + | 3.A.1.3.27 |
| TC | HRGMv2_2222_26 | HRGMv2_2222_26_2 | 1933 | 2664 | + | 3.A.1.3.12 |
| TF | HRGMv2_2222_26 | HRGMv2_2222_26_3 | 2654 | 3397 | + | Adeno_IVa2 |
| STP | HRGMv2_2222_26 | HRGMv2_2222_26_4 | 3578 | 4645 | + | Aminotran_1_2 |
| CAZyme | HRGMv2_2222_26 | HRGMv2_2222_26_5 | 4895 | 5566 | + | GH53 |
Gene ID: HRGMv2_2222_26_1
Type: TC
Location: 1161 - 1907 (+)
Type: TC
Location: 1161 - 1907 (+)
Gene ID: HRGMv2_2222_26_2
Type: TC
Location: 1933 - 2664 (+)
Type: TC
Location: 1933 - 2664 (+)
Gene ID: HRGMv2_2222_26_3
Type: TF
Location: 2654 - 3397 (+)
Type: TF
Location: 2654 - 3397 (+)
Gene ID: HRGMv2_2222_26_4
Type: STP
Location: 3578 - 4645 (+)
Type: STP
Location: 3578 - 4645 (+)
Gene ID: HRGMv2_2222_26_5
Type: CAZyme
Location: 4895 - 5566 (+)
Type: CAZyme
Location: 4895 - 5566 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter sp934307695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.