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Cluster: HRGMv2_2222_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2222_22 HRGMv2_2222_22_11 13263 14153 - 3.A.1.147.8
pfam HRGMv2_2222_22 HRGMv2_2222_22_12 14843 17032 - Ala_racemase_C | Ala_racemase_N | Acyl_transf_3
pfam HRGMv2_2222_22 HRGMv2_2222_22_13 17032 18081 - Dala_Dala_lig_N | ATP-grasp | CPSase_L_D2 | Dala_Dala_lig_C
TC HRGMv2_2222_22 HRGMv2_2222_22_14 18233 20353 - 2.A.53.4.2
CAZyme HRGMv2_2222_22 HRGMv2_2222_22_15 20372 21484 - GT28
TC HRGMv2_2222_22 HRGMv2_2222_22_16 21472 22086 - 9.B.31.1.1
TC HRGMv2_2222_22 HRGMv2_2222_22_17 22121 22783 - 2.A.38.4.6
TC HRGMv2_2222_22 HRGMv2_2222_22_18 22808 24154 - 2.A.38.4.3
STP HRGMv2_2222_22 HRGMv2_2222_22_19 24342 25430 - Aminotran_1_2
pfam HRGMv2_2222_22 HRGMv2_2222_22_20 25459 25992 - ECF-ribofla_trS | ECF_trnsprt
CAZyme HRGMv2_2222_22 HRGMv2_2222_22_21 26287 28290 - GH31_4
TF HRGMv2_2222_22 HRGMv2_2222_22_22 28549 29421 + HTH_AraC | HTH_AraC
NULL(UNKNOWN) HRGMv2_2222_22 HRGMv2_2222_22_23 29442 30257 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2222_22 HRGMv2_2222_22_24 31181 32917 - 2.A.114.1.3
pfam HRGMv2_2222_22 HRGMv2_2222_22_25 33544 34461 - Aldose_epim
pfam HRGMv2_2222_22 HRGMv2_2222_22_26 34465 35280 - HK
TC HRGMv2_2222_22 HRGMv2_2222_22_27 35291 35803 - 3.A.1.26.5
TC HRGMv2_2222_22 HRGMv2_2222_22_28 35860 37044 - 2.A.39.1.3
STP HRGMv2_2222_22 HRGMv2_2222_22_29 37041 37841 - PfkB
pfam HRGMv2_2222_22 HRGMv2_2222_22_30 37938 38573 - TMP-TENI
TC HRGMv2_2222_22 HRGMv2_2222_22_31 38840 39253 - 2.A.7.2.1
peptidase HRGMv2_2222_22 HRGMv2_2222_22_32 39307 40587 - M38.UNW
TC HRGMv2_2222_22 HRGMv2_2222_22_33 40879 43401 - 3.A.3.5.15
Gene ID: HRGMv2_2222_22_11
Type: TC
Location: 13263 - 14153 (-)
Gene ID: HRGMv2_2222_22_12
Type: pfam
Location: 14843 - 17032 (-)
Gene ID: HRGMv2_2222_22_13
Type: pfam
Location: 17032 - 18081 (-)
Gene ID: HRGMv2_2222_22_14
Type: TC
Location: 18233 - 20353 (-)
Gene ID: HRGMv2_2222_22_15
Type: CAZyme
Location: 20372 - 21484 (-)
Gene ID: HRGMv2_2222_22_16
Type: TC
Location: 21472 - 22086 (-)
Gene ID: HRGMv2_2222_22_17
Type: TC
Location: 22121 - 22783 (-)
Gene ID: HRGMv2_2222_22_18
Type: TC
Location: 22808 - 24154 (-)
Gene ID: HRGMv2_2222_22_19
Type: STP
Location: 24342 - 25430 (-)
Gene ID: HRGMv2_2222_22_20
Type: pfam
Location: 25459 - 25992 (-)
Gene ID: HRGMv2_2222_22_21
Type: CAZyme
Location: 26287 - 28290 (-)
Gene ID: HRGMv2_2222_22_22
Type: TF
Location: 28549 - 29421 (+)
Gene ID: HRGMv2_2222_22_23
Type:
Location: 29442 - 30257 (-)
Gene ID: HRGMv2_2222_22_24
Type: TC
Location: 31181 - 32917 (-)
Gene ID: HRGMv2_2222_22_25
Type: pfam
Location: 33544 - 34461 (-)
Gene ID: HRGMv2_2222_22_26
Type: pfam
Location: 34465 - 35280 (-)
Gene ID: HRGMv2_2222_22_27
Type: TC
Location: 35291 - 35803 (-)
Gene ID: HRGMv2_2222_22_28
Type: TC
Location: 35860 - 37044 (-)
Gene ID: HRGMv2_2222_22_29
Type: STP
Location: 37041 - 37841 (-)
Gene ID: HRGMv2_2222_22_30
Type: pfam
Location: 37938 - 38573 (-)
Gene ID: HRGMv2_2222_22_31
Type: TC
Location: 38840 - 39253 (-)
Gene ID: HRGMv2_2222_22_32
Type: peptidase
Location: 39307 - 40587 (-)
Gene ID: HRGMv2_2222_22_33
Type: TC
Location: 40879 - 43401 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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