Cluster: HRGMv2_2222_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2222
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2222_19 | HRGMv2_2222_19_5 | 3740 | 6598 | + | 9.B.74.1.4 |
| pfam | HRGMv2_2222_19 | HRGMv2_2222_19_6 | 6722 | 7948 | - | tRNA-synt_1b | SYY_C-terminal |
| CAZyme | HRGMv2_2222_19 | HRGMv2_2222_19_7 | 8390 | 10522 | + | GH25 |
| TC | HRGMv2_2222_19 | HRGMv2_2222_19_8 | 10818 | 11819 | + | 2.A.19.5.2 |
| TC | HRGMv2_2222_19 | HRGMv2_2222_19_9 | 11844 | 12518 | + | 2.A.106.1.3 |
Gene ID: HRGMv2_2222_19_5
Type: TC
Location: 3740 - 6598 (+)
Type: TC
Location: 3740 - 6598 (+)
Gene ID: HRGMv2_2222_19_6
Type: pfam
Location: 6722 - 7948 (-)
Type: pfam
Location: 6722 - 7948 (-)
Gene ID: HRGMv2_2222_19_7
Type: CAZyme
Location: 8390 - 10522 (+)
Type: CAZyme
Location: 8390 - 10522 (+)
Gene ID: HRGMv2_2222_19_8
Type: TC
Location: 10818 - 11819 (+)
Type: TC
Location: 10818 - 11819 (+)
Gene ID: HRGMv2_2222_19_9
Type: TC
Location: 11844 - 12518 (+)
Type: TC
Location: 11844 - 12518 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter sp934307695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.