Cluster: HRGMv2_2222_CGC15
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2222
- CGC Family ID: CGCFAM_00450
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2222_16 | HRGMv2_2222_16_47 | 52976 | 54343 | + | 9.B.18.1.2 |
| CAZyme | HRGMv2_2222_16 | HRGMv2_2222_16_48 | 54355 | 55419 | + | GT2 |
| pfam | HRGMv2_2222_16 | HRGMv2_2222_16_49 | 55434 | 56327 | + | LicD |
| TC | HRGMv2_2222_16 | HRGMv2_2222_16_50 | 56387 | 57163 | + | 3.A.1.103.1 |
| TC | HRGMv2_2222_16 | HRGMv2_2222_16_51 | 57203 | 57976 | + | 3.A.1.103.5 |
Gene ID: HRGMv2_2222_16_47
Type: TC
Location: 52976 - 54343 (+)
Type: TC
Location: 52976 - 54343 (+)
Gene ID: HRGMv2_2222_16_48
Type: CAZyme
Location: 54355 - 55419 (+)
Type: CAZyme
Location: 54355 - 55419 (+)
Gene ID: HRGMv2_2222_16_49
Type: pfam
Location: 55434 - 56327 (+)
Type: pfam
Location: 55434 - 56327 (+)
Gene ID: HRGMv2_2222_16_50
Type: TC
Location: 56387 - 57163 (+)
Type: TC
Location: 56387 - 57163 (+)
Gene ID: HRGMv2_2222_16_51
Type: TC
Location: 57203 - 57976 (+)
Type: TC
Location: 57203 - 57976 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter sp934307695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.