Cluster: HRGMv2_2222_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2222
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2222_12 | HRGMv2_2222_12_27 | 26880 | 29054 | + | 1.B.52.2.2 |
| pfam | HRGMv2_2222_12 | HRGMv2_2222_12_28 | 29341 | 32475 | + | UvrD-helicase | UvrD_C_2 |
| TC | HRGMv2_2222_12 | HRGMv2_2222_12_29 | 32590 | 32943 | + | 1.E.14.1.1 |
| TC | HRGMv2_2222_12 | HRGMv2_2222_12_30 | 32940 | 33629 | + | 2.A.122.1.6 |
| CAZyme | HRGMv2_2222_12 | HRGMv2_2222_12_31 | 33678 | 35816 | + | GH3 |
| TC | HRGMv2_2222_12 | HRGMv2_2222_12_32 | 36210 | 37754 | + | 3.A.1.121.2 |
Gene ID: HRGMv2_2222_12_27
Type: TC
Location: 26880 - 29054 (+)
Type: TC
Location: 26880 - 29054 (+)
Gene ID: HRGMv2_2222_12_28
Type: pfam
Location: 29341 - 32475 (+)
Type: pfam
Location: 29341 - 32475 (+)
Gene ID: HRGMv2_2222_12_29
Type: TC
Location: 32590 - 32943 (+)
Type: TC
Location: 32590 - 32943 (+)
Gene ID: HRGMv2_2222_12_30
Type: TC
Location: 32940 - 33629 (+)
Type: TC
Location: 32940 - 33629 (+)
Gene ID: HRGMv2_2222_12_31
Type: CAZyme
Location: 33678 - 35816 (+)
Type: CAZyme
Location: 33678 - 35816 (+)
Gene ID: HRGMv2_2222_12_32
Type: TC
Location: 36210 - 37754 (+)
Type: TC
Location: 36210 - 37754 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter sp934307695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.