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Cluster: HRGMv2_2195_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2195_3 HRGMv2_2195_3_127 116801 118633 + 3.D.1.5.1
TC HRGMv2_2195_3 HRGMv2_2195_3_128 118627 120390 + 3.D.1.6.2
CAZyme HRGMv2_2195_3 HRGMv2_2195_3_129 120478 122667 - GH36
TC HRGMv2_2195_3 HRGMv2_2195_3_130 122701 123543 - 3.A.1.1.28
TC HRGMv2_2195_3 HRGMv2_2195_3_131 123543 124409 - 3.A.1.1.28
TC HRGMv2_2195_3 HRGMv2_2195_3_132 124428 125717 - 3.A.1.1.28
TF HRGMv2_2195_3 HRGMv2_2195_3_133 125985 126836 + HTH_AraC | HTH_AraC
pfam HRGMv2_2195_3 HRGMv2_2195_3_134 126950 128011 + NMT1 | NMT1_2
TC HRGMv2_2195_3 HRGMv2_2195_3_135 128103 129737 + 4.C.1.1.4
Gene ID: HRGMv2_2195_3_127
Type: TC
Location: 116801 - 118633 (+)
Gene ID: HRGMv2_2195_3_128
Type: TC
Location: 118627 - 120390 (+)
Gene ID: HRGMv2_2195_3_129
Type: CAZyme
Location: 120478 - 122667 (-)
Gene ID: HRGMv2_2195_3_130
Type: TC
Location: 122701 - 123543 (-)
Gene ID: HRGMv2_2195_3_131
Type: TC
Location: 123543 - 124409 (-)
Gene ID: HRGMv2_2195_3_132
Type: TC
Location: 124428 - 125717 (-)
Gene ID: HRGMv2_2195_3_133
Type: TF
Location: 125985 - 126836 (+)
Gene ID: HRGMv2_2195_3_134
Type: pfam
Location: 126950 - 128011 (+)
Gene ID: HRGMv2_2195_3_135
Type: TC
Location: 128103 - 129737 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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