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Cluster: HRGMv2_2195_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2195_26 HRGMv2_2195_26_28 23683 26142 - GH3
TC HRGMv2_2195_26 HRGMv2_2195_26_29 26227 27072 - 3.A.1.1.20
TC HRGMv2_2195_26 HRGMv2_2195_26_30 27072 28037 - 3.A.1.1.4
NULL(UNKNOWN) HRGMv2_2195_26 HRGMv2_2195_26_31 28105 29487 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2195_26 HRGMv2_2195_26_32 29740 32445 + GH94
CAZyme HRGMv2_2195_26 HRGMv2_2195_26_33 32466 34877 + GH94
TF HRGMv2_2195_26 HRGMv2_2195_26_34 34942 35709 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_2195_26 HRGMv2_2195_26_35 35952 36815 - GH16_3
Gene ID: HRGMv2_2195_26_28
Type: CAZyme
Location: 23683 - 26142 (-)
Gene ID: HRGMv2_2195_26_29
Type: TC
Location: 26227 - 27072 (-)
Gene ID: HRGMv2_2195_26_30
Type: TC
Location: 27072 - 28037 (-)
Gene ID: HRGMv2_2195_26_31
Type:
Location: 28105 - 29487 (-)
Gene ID: HRGMv2_2195_26_32
Type: CAZyme
Location: 29740 - 32445 (+)
Gene ID: HRGMv2_2195_26_33
Type: CAZyme
Location: 32466 - 34877 (+)
Gene ID: HRGMv2_2195_26_34
Type: TF
Location: 34942 - 35709 (-)
Gene ID: HRGMv2_2195_26_35
Type: CAZyme
Location: 35952 - 36815 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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