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Cluster: HRGMv2_2195_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2195_11 HRGMv2_2195_11_55 49664 49927 + 3.A.1.1.36
pfam HRGMv2_2195_11 HRGMv2_2195_11_56 49936 50769 + NAT_N | GNAT_C
STP HRGMv2_2195_11 HRGMv2_2195_11_57 50845 52152 + SBP_bac_1
TC HRGMv2_2195_11 HRGMv2_2195_11_58 52154 53101 + 3.A.1.1.3
TC HRGMv2_2195_11 HRGMv2_2195_11_59 53101 53937 + 3.A.1.1.39
CAZyme HRGMv2_2195_11 HRGMv2_2195_11_60 53970 55640 + GH123
TC HRGMv2_2195_11 HRGMv2_2195_11_61 55673 57733 + 5.A.3.5.2
TC HRGMv2_2195_11 HRGMv2_2195_11_62 57730 58161 + 5.A.3.3.1
Gene ID: HRGMv2_2195_11_55
Type: TC
Location: 49664 - 49927 (+)
Gene ID: HRGMv2_2195_11_56
Type: pfam
Location: 49936 - 50769 (+)
Gene ID: HRGMv2_2195_11_57
Type: STP
Location: 50845 - 52152 (+)
Gene ID: HRGMv2_2195_11_58
Type: TC
Location: 52154 - 53101 (+)
Gene ID: HRGMv2_2195_11_59
Type: TC
Location: 53101 - 53937 (+)
Gene ID: HRGMv2_2195_11_60
Type: CAZyme
Location: 53970 - 55640 (+)
Gene ID: HRGMv2_2195_11_61
Type: TC
Location: 55673 - 57733 (+)
Gene ID: HRGMv2_2195_11_62
Type: TC
Location: 57730 - 58161 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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