Cluster: HRGMv2_2189_CGC40
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2189
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2189_1 | HRGMv2_2189_1_3073 | 3407483 | 3409813 | + | 3.A.7.7.1 |
| NULL(UNKNOWN) | HRGMv2_2189_1 | HRGMv2_2189_1_3074 | 3409813 | 3410163 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2189_1 | HRGMv2_2189_1_3075 | 3410193 | 3411884 | + | GH23 |
Gene ID: HRGMv2_2189_1_3073
Type: TC
Location: 3407483 - 3409813 (+)
Type: TC
Location: 3407483 - 3409813 (+)
Gene ID: HRGMv2_2189_1_3074
Type:
Location: 3409813 - 3410163 (+)
Type:
Location: 3409813 - 3410163 (+)
Gene ID: HRGMv2_2189_1_3075
Type: CAZyme
Location: 3410193 - 3411884 (+)
Type: CAZyme
Location: 3410193 - 3411884 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter faecis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2189_1_3073 | vegan > omnivore | 1.22476 | 0.02719 |