dbCAN HGM

Cluster: HRGMv2_2189_CGC24

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_2189_1	HRGMv2_2189_1_2173	2371807	2372472	-	3.A.1.125.3
pfam	HRGMv2_2189_1	HRGMv2_2189_1_2174	2372662	2373081	-	SnoaL_2
TC	HRGMv2_2189_1	HRGMv2_2189_1_2175	2373108	2374139	-	2.A.21.9.2
TF	HRGMv2_2189_1	HRGMv2_2189_1_2176	2374136	2374828	-	Trans_reg_C
TF	HRGMv2_2189_1	HRGMv2_2189_1_2177	2375040	2375165	-	HTH_3
CAZyme	HRGMv2_2189_1	HRGMv2_2189_1_2178	2375282	2376235	-	GH31_1
CAZyme	HRGMv2_2189_1	HRGMv2_2189_1_2179	2376251	2377273	-	GH31_1
CAZyme	HRGMv2_2189_1	HRGMv2_2189_1_2180	2377270	2378958	-	GH13_31
TF	HRGMv2_2189_1	HRGMv2_2189_1_2181	2379159	2380166	-	LacI
pfam	HRGMv2_2189_1	HRGMv2_2189_1_2182	2380449	2381321	+	YitT_membrane \| DUF2179
TC	HRGMv2_2189_1	HRGMv2_2189_1_2183	2381446	2382945	-	8.A.59.4.1

Gene ID: HRGMv2_2189_1_2173
Type: TC
Location: 2371807 - 2372472 (-)

Gene ID: HRGMv2_2189_1_2174
Type: pfam
Location: 2372662 - 2373081 (-)

Gene ID: HRGMv2_2189_1_2175
Type: TC
Location: 2373108 - 2374139 (-)

Gene ID: HRGMv2_2189_1_2176
Type: TF
Location: 2374136 - 2374828 (-)

Gene ID: HRGMv2_2189_1_2177
Type: TF
Location: 2375040 - 2375165 (-)

Gene ID: HRGMv2_2189_1_2178
Type: CAZyme
Location: 2375282 - 2376235 (-)

Gene ID: HRGMv2_2189_1_2179
Type: CAZyme
Location: 2376251 - 2377273 (-)

Gene ID: HRGMv2_2189_1_2180
Type: CAZyme
Location: 2377270 - 2378958 (-)

Gene ID: HRGMv2_2189_1_2181
Type: TF
Location: 2379159 - 2380166 (-)

Gene ID: HRGMv2_2189_1_2182
Type: pfam
Location: 2380449 - 2381321 (+)

Gene ID: HRGMv2_2189_1_2183
Type: TC
Location: 2381446 - 2382945 (-)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_2189_1_2178	vegan > omnivore	1.15856	0.03529
HRGMv2_2189_1_2180	vegan > omnivore	1.01691	0.03529
HRGMv2_2189_1_2181	vegan > omnivore	1.37626	0.03529