Cluster: HRGMv2_2189_CGC22
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2189
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2189_1 | HRGMv2_2189_1_1997 | 2188386 | 2189135 | - | 9.B.158.1.1 |
| sulfatase | HRGMv2_2189_1 | HRGMv2_2189_1_1998 | 2189444 | 2190169 | - | S1_9 |
| CAZyme | HRGMv2_2189_1 | HRGMv2_2189_1_1999 | 2190291 | 2191415 | - | CE9 |
| TC | HRGMv2_2189_1 | HRGMv2_2189_1_2000 | 2191760 | 2193280 | + | 2.A.21.2.5 |
| pfam | HRGMv2_2189_1 | HRGMv2_2189_1_2001 | 2193359 | 2194612 | - | SLFN_AlbA_2 | HATPase_c_4 |
| pfam | HRGMv2_2189_1 | HRGMv2_2189_1_2002 | 2194820 | 2195272 | - | HSP20 | ArsA_HSP20 |
| TC | HRGMv2_2189_1 | HRGMv2_2189_1_2003 | 2195381 | 2196748 | - | 2.A.66.1.26 |
| TC | HRGMv2_2189_1 | HRGMv2_2189_1_2004 | 2196993 | 2197769 | - | 2.A.5.5.2 |
Gene ID: HRGMv2_2189_1_1997
Type: TC
Location: 2188386 - 2189135 (-)
Type: TC
Location: 2188386 - 2189135 (-)
Gene ID: HRGMv2_2189_1_1998
Type: sulfatase
Location: 2189444 - 2190169 (-)
Type: sulfatase
Location: 2189444 - 2190169 (-)
Gene ID: HRGMv2_2189_1_1999
Type: CAZyme
Location: 2190291 - 2191415 (-)
Type: CAZyme
Location: 2190291 - 2191415 (-)
Gene ID: HRGMv2_2189_1_2000
Type: TC
Location: 2191760 - 2193280 (+)
Type: TC
Location: 2191760 - 2193280 (+)
Gene ID: HRGMv2_2189_1_2001
Type: pfam
Location: 2193359 - 2194612 (-)
Type: pfam
Location: 2193359 - 2194612 (-)
Gene ID: HRGMv2_2189_1_2002
Type: pfam
Location: 2194820 - 2195272 (-)
Type: pfam
Location: 2194820 - 2195272 (-)
Gene ID: HRGMv2_2189_1_2003
Type: TC
Location: 2195381 - 2196748 (-)
Type: TC
Location: 2195381 - 2196748 (-)
Gene ID: HRGMv2_2189_1_2004
Type: TC
Location: 2196993 - 2197769 (-)
Type: TC
Location: 2196993 - 2197769 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter faecis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2189_1_2000 | vegetarian > vegan | 1.07421 | 0.04365 |
| HRGMv2_2189_1_2003 | vegan > omnivore | 2.36232 | 0.01301 |