Cluster: HRGMv2_2182_CGC4
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2182
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2182_1 | HRGMv2_2182_1_549 | 600663 | 602354 | - | GH18 |
| NULL(UNKNOWN) | HRGMv2_2182_1 | HRGMv2_2182_1_550 | 602588 | 603325 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2182_1 | HRGMv2_2182_1_551 | 603282 | 604775 | - | 9.B.106.3.1 |
Gene ID: HRGMv2_2182_1_549
Type: CAZyme
Location: 600663 - 602354 (-)
Type: CAZyme
Location: 600663 - 602354 (-)
Gene ID: HRGMv2_2182_1_550
Type:
Location: 602588 - 603325 (-)
Type:
Location: 602588 - 603325 (-)
Gene ID: HRGMv2_2182_1_551
Type: TC
Location: 603282 - 604775 (-)
Type: TC
Location: 603282 - 604775 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp000436535
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2182_1_549 | vegan > omnivore | 2.89568 | 0.00565 |
| HRGMv2_2182_1_549 | vegetarian > omnivore | 1.77064 | 0.02312 |
| HRGMv2_2182_1_551 | vegan > omnivore | 1.05797 | 0.00565 |