Cluster: HRGMv2_2182_CGC30
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2182
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2182_2 | HRGMv2_2182_2_547 | 627501 | 629924 | + | 3.A.1.106.8 |
| TC | HRGMv2_2182_2 | HRGMv2_2182_2_548 | 629968 | 631848 | + | 3.A.1.135.8 |
| NULL(UNKNOWN) | HRGMv2_2182_2 | HRGMv2_2182_2_549 | 632227 | 632427 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2182_2 | HRGMv2_2182_2_550 | 632603 | 633967 | - | 2.A.66.1.32 |
| CAZyme | HRGMv2_2182_2 | HRGMv2_2182_2_551 | 633997 | 635307 | - | GH13_20 |
| TC | HRGMv2_2182_2 | HRGMv2_2182_2_552 | 635580 | 639113 | + | 3.A.1.122.2 |
Gene ID: HRGMv2_2182_2_547
Type: TC
Location: 627501 - 629924 (+)
Type: TC
Location: 627501 - 629924 (+)
Gene ID: HRGMv2_2182_2_548
Type: TC
Location: 629968 - 631848 (+)
Type: TC
Location: 629968 - 631848 (+)
Gene ID: HRGMv2_2182_2_549
Type:
Location: 632227 - 632427 (+)
Type:
Location: 632227 - 632427 (+)
Gene ID: HRGMv2_2182_2_550
Type: TC
Location: 632603 - 633967 (-)
Type: TC
Location: 632603 - 633967 (-)
Gene ID: HRGMv2_2182_2_551
Type: CAZyme
Location: 633997 - 635307 (-)
Type: CAZyme
Location: 633997 - 635307 (-)
Gene ID: HRGMv2_2182_2_552
Type: TC
Location: 635580 - 639113 (+)
Type: TC
Location: 635580 - 639113 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp000436535
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2182_2_547 | vegetarian > vegan | 1.24504 | 0.00110 |